Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00316 * 2 1 4 4 H 1.48499 * 109.47039 * 270.00575 * 3 2 1 5 5 H 1.48502 * 109.46853 * 29.99751 * 3 2 1 6 6 H 1.48491 * 109.47223 * 149.99886 * 3 2 1 7 7 C 1.38955 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99470 * 179.97438 * 7 2 1 9 9 N 1.37090 * 120.00048 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99966 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00479 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00236 * 179.97438 * 10 9 7 13 13 C 1.50699 * 109.47409 * 179.97438 * 12 10 9 14 14 C 1.38602 * 120.79596 * 90.00241 * 13 12 10 15 15 N 1.32331 * 119.10423 * 179.97438 * 14 13 12 16 16 C 1.31794 * 120.81888 * 359.97438 * 15 14 13 17 17 N 1.31795 * 121.75372 * 0.02562 * 16 15 14 18 18 C 1.32334 * 120.81807 * 0.02562 * 17 16 15 19 19 H 0.97000 * 119.99850 * 359.97438 * 1 2 3 20 20 H 0.97004 * 120.00594 * 359.97438 * 9 7 2 21 21 H 1.08998 * 109.46914 * 60.00087 * 12 10 9 22 22 H 1.08997 * 109.47493 * 300.00515 * 12 10 9 23 23 H 1.07994 * 120.45169 * 359.95292 * 14 13 12 24 24 H 1.08003 * 119.12654 * 179.71869 * 16 15 14 25 25 H 1.07998 * 120.44737 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2436 -4.8629 0.0000 13 6 2.2228 -6.0084 -0.0007 14 6 2.6848 -6.5478 1.1895 15 7 3.5439 -7.5536 1.1498 16 6 3.9591 -8.0419 -0.0018 17 7 3.5415 -7.5544 -1.1529 18 6 2.6831 -6.5479 -1.1914 19 1 -0.4850 0.8401 0.0004 20 1 0.3533 -2.3907 0.0002 21 1 0.6166 -4.9208 -0.8897 22 1 0.6172 -4.9205 0.8902 23 1 2.3485 -6.1525 2.1366 24 1 4.6641 -8.8601 -0.0024 25 1 2.3451 -6.1528 -2.1380 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307298011.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = 3.231437 kcal Electronic energy + Delta-G solvation = -12625.643379 eV Core-core repulsion = 10218.146010 eV Total energy + Delta-G solvation = -2407.497370 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.76556 -38.21572 -34.20755 -33.43647 -33.13926 -31.31150 -28.07787 -24.91452 -24.33737 -22.73560 -19.34827 -17.98233 -17.40635 -17.32404 -16.05556 -14.75835 -14.47271 -14.24054 -13.95898 -13.54628 -13.42234 -13.28768 -12.51747 -11.65700 -11.63240 -11.09613 -10.70103 -10.55816 -10.44687 -10.28584 -9.60442 -9.26245 -9.01332 -8.48085 -8.07010 -6.50227 -3.91541 1.15593 1.32294 3.12534 3.22438 3.28249 3.77817 3.96419 4.14392 4.35028 4.45063 4.87120 4.88860 5.05221 5.11578 5.26410 5.58915 5.83976 5.86473 6.21705 6.23046 6.62829 7.16407 7.47624 7.95827 8.27604 8.49774 9.08347 9.43107 9.93594 10.66999 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.073880 B = 0.006737 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.904187 B = 4154.951570 C = 4251.883532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.303 4.303 8 H 0.103 0.897 9 N -0.557 5.557 10 C 0.439 3.561 11 O -0.592 6.592 12 C -0.091 4.091 13 C -0.143 4.143 14 C 0.155 3.845 15 N -0.522 5.522 16 C 0.275 3.725 17 N -0.522 5.522 18 C 0.155 3.845 19 H 0.273 0.727 20 H 0.394 0.606 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.164 0.836 24 H 0.191 0.809 25 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 -9.584 0.012 9.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.192 5.192 10 C 0.224 3.776 11 O -0.478 6.478 12 C -0.132 4.132 13 C -0.147 4.147 14 C -0.010 4.010 15 N -0.235 5.235 16 C -0.013 4.013 17 N -0.235 5.235 18 C -0.010 4.010 19 H 0.083 0.917 20 H 0.227 0.773 21 H 0.112 0.888 22 H 0.113 0.887 23 H 0.181 0.819 24 H 0.207 0.793 25 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.690 -10.174 0.016 10.197 hybrid contribution -0.794 1.666 -0.010 1.846 sum -0.104 -8.507 0.006 8.508 Atomic orbital electron populations 1.69605 1.05958 1.28364 1.50025 1.25281 0.95646 0.99806 0.97013 0.85846 0.79271 0.80659 0.78479 1.20315 1.20824 1.19370 1.19720 0.93415 0.82180 1.47921 0.87888 1.41867 1.09284 1.04541 1.63546 1.19666 0.88201 0.84513 0.85172 1.90559 1.13857 1.87196 1.56183 1.20469 0.96685 0.91534 1.04536 1.21201 1.00053 0.97836 0.95619 1.23047 0.89907 0.89765 0.98307 1.68361 1.12001 1.12094 1.31077 1.24802 0.95984 0.97490 0.83032 1.68363 1.11967 1.12097 1.31107 1.23043 0.89930 0.89762 0.98295 0.91720 0.77255 0.88753 0.88744 0.81854 0.79282 0.81856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.75 13.05 55.50 0.72 -23.02 15 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 15 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.61 15 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 15 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 15 9 N -0.56 -13.50 5.29 -10.96 -0.06 -13.56 15 10 C 0.44 9.81 7.78 -10.99 -0.09 9.73 15 11 O -0.59 -15.73 15.61 5.55 0.09 -15.64 15 12 C -0.09 -1.43 5.88 -29.03 -0.17 -1.60 15 13 C -0.14 -2.29 4.41 -104.36 -0.46 -2.75 15 14 C 0.16 2.44 11.01 -17.20 -0.19 2.25 15 15 N -0.52 -8.26 10.44 -14.58 -0.15 -8.41 15 16 C 0.27 4.03 12.29 -92.15 -1.13 2.89 15 17 N -0.52 -8.26 10.44 -14.58 -0.15 -8.41 15 18 C 0.16 2.44 11.01 -17.21 -0.19 2.25 15 19 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 20 H 0.39 9.01 7.90 -40.82 -0.32 8.69 15 21 H 0.09 1.26 8.10 -51.93 -0.42 0.84 15 22 H 0.09 1.26 8.10 -51.93 -0.42 0.84 15 23 H 0.16 2.21 8.06 -52.49 -0.42 1.79 15 24 H 0.19 2.05 8.06 -52.48 -0.42 1.62 15 25 H 0.16 2.21 8.06 -52.49 -0.42 1.79 15 LS Contribution 236.99 15.07 3.57 3.57 Total: -1.00 -31.87 236.99 -5.41 -37.28 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -1.94 Total: 7.64 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -2.47 Total: 4.95 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.36 Total: -53.41 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.09 Total: -15.64 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.87 -5.41 -37.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307298011.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.515 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds