Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00316 * 2 1 4 4 H 1.48499 * 109.47039 * 270.00575 * 3 2 1 5 5 H 1.48502 * 109.46853 * 29.99751 * 3 2 1 6 6 H 1.48491 * 109.47223 * 149.99886 * 3 2 1 7 7 C 1.38955 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99470 * 179.97438 * 7 2 1 9 9 N 1.37090 * 120.00048 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99966 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00479 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00236 * 179.97438 * 10 9 7 13 13 C 1.50699 * 109.47409 * 179.97438 * 12 10 9 14 14 C 1.38602 * 120.79596 * 90.00241 * 13 12 10 15 15 N 1.32331 * 119.10423 * 179.97438 * 14 13 12 16 16 C 1.31794 * 120.81888 * 359.97438 * 15 14 13 17 17 N 1.31795 * 121.75372 * 0.02562 * 16 15 14 18 18 C 1.32334 * 120.81807 * 0.02562 * 17 16 15 19 19 H 0.97000 * 119.99850 * 359.97438 * 1 2 3 20 20 H 0.97004 * 120.00594 * 359.97438 * 9 7 2 21 21 H 1.08998 * 109.46914 * 60.00087 * 12 10 9 22 22 H 1.08997 * 109.47493 * 300.00515 * 12 10 9 23 23 H 1.07994 * 120.45169 * 359.95292 * 14 13 12 24 24 H 1.08003 * 119.12654 * 179.71869 * 16 15 14 25 25 H 1.07998 * 120.44737 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2436 -4.8629 0.0000 13 6 2.2228 -6.0084 -0.0007 14 6 2.6848 -6.5478 1.1895 15 7 3.5439 -7.5536 1.1498 16 6 3.9591 -8.0419 -0.0018 17 7 3.5415 -7.5544 -1.1529 18 6 2.6831 -6.5479 -1.1914 19 1 -0.4850 0.8401 0.0004 20 1 0.3533 -2.3907 0.0002 21 1 0.6166 -4.9208 -0.8897 22 1 0.6172 -4.9205 0.8902 23 1 2.3485 -6.1525 2.1366 24 1 4.6641 -8.8601 -0.0024 25 1 2.3451 -6.1528 -2.1380 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307298011.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = -19.072513 kcal Electronic energy + Delta-G solvation = -12626.610551 eV Core-core repulsion = 10218.146010 eV Total energy + Delta-G solvation = -2408.464542 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.96082 -40.01077 -36.08410 -34.61712 -34.52606 -33.25705 -29.46555 -26.74539 -25.52253 -24.07359 -21.08916 -19.92201 -18.53256 -18.52183 -17.78432 -16.60434 -16.06219 -15.62459 -15.56984 -15.07626 -14.54446 -14.46303 -14.25087 -13.52710 -13.14099 -12.79000 -12.43605 -12.15263 -11.86657 -11.75686 -11.52961 -10.68011 -10.20106 -10.16610 -10.03139 -8.48203 -5.96808 -0.03151 0.12967 1.37026 1.42208 1.53973 2.02909 2.29192 2.77887 3.19446 3.28632 3.30838 3.36156 3.73065 3.77941 3.95226 4.43331 4.55778 4.66314 4.76430 5.02354 5.40371 5.47514 5.96006 6.00544 6.57268 7.10791 7.10933 7.54225 8.09520 8.68641 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.073880 B = 0.006737 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.904187 B = 4154.951570 C = 4251.883532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.989 3.011 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.335 4.335 8 H 0.076 0.924 9 N -0.567 5.567 10 C 0.441 3.559 11 O -0.637 6.637 12 C -0.074 4.074 13 C -0.159 4.159 14 C 0.147 3.853 15 N -0.536 5.536 16 C 0.273 3.727 17 N -0.536 5.536 18 C 0.147 3.853 19 H 0.278 0.722 20 H 0.400 0.600 21 H 0.125 0.875 22 H 0.125 0.875 23 H 0.180 0.820 24 H 0.224 0.776 25 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.125 -9.938 -0.004 10.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.465 4.465 8 H 0.094 0.906 9 N -0.204 5.204 10 C 0.229 3.771 11 O -0.525 6.525 12 C -0.115 4.115 13 C -0.163 4.163 14 C -0.018 4.018 15 N -0.250 5.250 16 C -0.014 4.014 17 N -0.250 5.250 18 C -0.018 4.018 19 H 0.088 0.912 20 H 0.234 0.766 21 H 0.143 0.857 22 H 0.143 0.857 23 H 0.197 0.803 24 H 0.240 0.760 25 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.173 -10.541 -0.002 10.542 hybrid contribution -0.601 1.684 -0.006 1.788 sum -0.428 -8.857 -0.007 8.867 Atomic orbital electron populations 1.69653 1.06689 1.29370 1.49950 1.25976 0.96503 1.02242 0.96178 0.84984 0.77911 0.77177 0.78630 1.19697 1.19479 1.19993 1.19631 0.92629 0.84116 1.50121 0.90555 1.41917 1.09495 1.04544 1.64395 1.20763 0.87965 0.86010 0.82399 1.90531 1.16287 1.88201 1.57503 1.20395 0.96352 0.87247 1.07549 1.21258 1.00860 0.98299 0.95930 1.23425 0.89623 0.89679 0.99079 1.68438 1.12423 1.12488 1.31613 1.25528 0.95695 0.97712 0.82490 1.68441 1.12389 1.12489 1.31639 1.23422 0.89644 0.89675 0.99066 0.91206 0.76562 0.85682 0.85674 0.80264 0.76006 0.80260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.74 13.05 21.66 0.28 -47.46 15 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 15 3 Si 0.99 42.00 29.55 68.60 2.03 44.03 15 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 15 7 C -0.34 -18.46 9.68 84.04 0.81 -17.64 15 8 H 0.08 4.54 7.16 -2.91 -0.02 4.51 15 9 N -0.57 -27.44 5.29 -306.99 -1.62 -29.07 15 10 C 0.44 19.45 7.78 87.66 0.68 20.14 15 11 O -0.64 -34.11 15.61 -3.07 -0.05 -34.15 15 12 C -0.07 -2.19 5.88 29.10 0.17 -2.02 15 13 C -0.16 -4.83 4.41 -19.69 -0.09 -4.92 15 14 C 0.15 4.40 11.01 84.70 0.93 5.33 15 15 N -0.54 -16.13 10.44 -200.05 -2.09 -18.22 15 16 C 0.27 7.51 12.29 180.88 2.22 9.73 15 17 N -0.54 -16.12 10.44 -200.05 -2.09 -18.21 15 18 C 0.15 4.40 11.01 84.70 0.93 5.33 15 19 H 0.28 13.61 8.31 -92.71 -0.77 12.84 15 20 H 0.40 18.06 7.90 -92.71 -0.73 17.32 15 21 H 0.13 2.94 8.10 -2.39 -0.02 2.92 15 22 H 0.13 2.94 8.10 -2.39 -0.02 2.92 15 23 H 0.18 4.55 8.06 -2.91 -0.02 4.53 15 24 H 0.22 4.27 8.06 -2.91 -0.02 4.24 15 25 H 0.18 4.55 8.06 -2.91 -0.02 4.53 15 Total: -1.00 -68.15 236.99 3.09 -65.06 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.49 Total: 22.03 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 6.13 Total: 15.98 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -5.52 Total: -112.95 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.05 Total: -34.15 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -68.15 3.09 -65.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307298011.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.989 kcal (2) G-P(sol) polarization free energy of solvation -68.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds