Wall clock time and date at job start Mon Mar 30 2020 02:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86795 * 120.00100 * 2 1 4 4 H 1.48502 * 109.47433 * 275.74110 * 3 2 1 5 5 H 1.48500 * 109.46893 * 35.74233 * 3 2 1 6 6 H 1.48500 * 109.47015 * 155.73880 * 3 2 1 7 7 C 1.39854 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 339.98719 * 7 2 1 9 9 C 1.41227 * 119.99984 * 159.99333 * 7 2 1 10 10 C 1.41043 * 120.06755 * 334.80379 * 9 7 2 11 11 C 1.36176 * 120.32161 * 180.02562 * 10 9 7 12 12 C 1.39531 * 120.46502 * 0.02562 * 11 10 9 13 13 N 1.38183 * 119.94658 * 179.97438 * 12 11 10 14 14 C 1.40903 * 120.11677 * 359.97438 * 12 11 10 15 15 C 1.47390 * 120.16047 * 180.02562 * 14 12 11 16 16 O 1.21515 * 120.00245 * 353.40794 * 15 14 12 17 17 O 1.34757 * 119.99998 * 173.40732 * 15 14 12 18 18 C 1.39075 * 119.67743 * 0.28052 * 14 12 11 19 19 H 0.96998 * 120.00127 * 359.97438 * 1 2 3 20 20 H 1.08000 * 119.83591 * 359.97438 * 10 9 7 21 21 H 1.08008 * 119.76837 * 179.97438 * 11 10 9 22 22 H 0.97003 * 120.00211 * 197.39671 * 13 12 11 23 23 H 0.97000 * 119.99556 * 17.39672 * 13 12 11 24 24 H 0.96694 * 117.00161 * 179.97438 * 17 15 14 25 25 H 1.07999 * 120.22667 * 179.70026 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3693 2.1165 -1.3930 5 1 1.5064 2.6145 0.8179 6 1 3.5960 1.4081 0.5753 7 6 2.0083 -1.2112 -0.0005 8 1 1.5172 -2.1184 0.3191 9 6 3.3566 -1.2480 -0.4190 10 6 3.8485 -0.2671 -1.3052 11 6 5.1476 -0.2979 -1.7124 12 6 6.0074 -1.2991 -1.2594 13 7 7.3235 -1.3204 -1.6799 14 6 5.5361 -2.2884 -0.3737 15 6 6.4437 -3.3461 0.1059 16 8 7.5653 -3.4384 -0.3526 17 8 6.0298 -4.2108 1.0529 18 6 4.2090 -2.2652 0.0415 19 1 -0.4850 0.8400 0.0004 20 1 3.1914 0.5117 -1.6631 21 1 5.5147 0.4574 -2.3915 22 1 7.8510 -2.1286 -1.5820 23 1 7.7199 -0.5272 -2.0731 24 1 6.6602 -4.8875 1.3353 25 1 3.8371 -3.0220 0.7163 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307438604.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:50 Heat of formation + Delta-G solvation = -91.983506 kcal Electronic energy + Delta-G solvation = -13010.790000 eV Core-core repulsion = 10566.871049 eV Total energy + Delta-G solvation = -2443.918951 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.35442 -39.47810 -37.20788 -35.98391 -34.43278 -32.17634 -30.78136 -26.34385 -25.24078 -22.98739 -21.94247 -19.64701 -18.83801 -18.07077 -17.41993 -17.16711 -16.62204 -16.52912 -15.29833 -14.84888 -14.48284 -14.35743 -13.97140 -13.87072 -12.88277 -12.83367 -12.52937 -12.48629 -12.02574 -11.62262 -11.52128 -10.99728 -10.75338 -9.77625 -8.79157 -8.61019 -6.21155 0.04540 0.85290 1.29454 1.45928 1.51466 1.72304 2.16904 2.29802 2.66276 3.33017 3.50544 4.10415 4.32196 4.52307 4.79614 4.85471 5.16284 5.37612 5.43152 5.45470 5.66017 5.86698 6.07077 6.36978 6.66662 6.86946 6.92299 7.12203 7.30058 8.30931 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.044742 B = 0.010862 C = 0.009203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.663151 B = 2577.262297 C = 3041.919779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.043 3.957 3 Si 0.959 3.041 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.250 1.250 7 C -0.485 4.485 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.156 4.156 11 C -0.165 4.165 12 C 0.185 3.815 13 N -0.865 5.865 14 C -0.193 4.193 15 C 0.543 3.457 16 O -0.551 6.551 17 O -0.506 6.506 18 C -0.125 4.125 19 H 0.290 0.710 20 H 0.109 0.891 21 H 0.142 0.858 22 H 0.405 0.595 23 H 0.399 0.601 24 H 0.428 0.572 25 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.871 -0.174 -1.095 10.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.170 4.170 3 Si 0.783 3.217 4 H -0.178 1.178 5 H -0.209 1.209 6 H -0.174 1.174 7 C -0.516 4.516 8 H 0.072 0.928 9 C 0.016 3.984 10 C -0.176 4.176 11 C -0.187 4.187 12 C 0.078 3.922 13 N -0.416 5.416 14 C -0.199 4.199 15 C 0.392 3.608 16 O -0.445 6.445 17 O -0.319 6.319 18 C -0.146 4.146 19 H 0.101 0.899 20 H 0.126 0.874 21 H 0.160 0.840 22 H 0.244 0.756 23 H 0.228 0.772 24 H 0.289 0.711 25 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.585 0.113 -1.279 10.663 hybrid contribution 0.323 -0.007 0.226 0.394 sum 10.908 0.107 -1.053 10.959 Atomic orbital electron populations 1.69778 1.09156 1.31072 1.38710 1.26756 0.95292 1.04037 0.90876 0.85623 0.79791 0.76856 0.79453 1.17839 1.20909 1.17371 1.19253 0.95061 0.95801 1.41502 0.92770 1.17645 0.93138 0.93680 0.93974 1.21043 0.96277 1.00616 0.99655 1.20310 0.92961 1.01093 1.04345 1.17434 0.86535 0.94644 0.93585 1.42581 1.09648 1.18668 1.70661 1.18561 0.94666 0.99842 1.06837 1.20812 0.84625 0.79733 0.75617 1.90487 1.22378 1.73278 1.58357 1.84628 1.50206 1.43585 1.53434 1.21169 0.91434 1.00846 1.01144 0.89949 0.87355 0.84007 0.75646 0.77152 0.71141 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.26 13.93 21.81 0.30 -46.95 15 2 C 0.04 2.28 5.40 85.22 0.46 2.74 15 3 Si 0.96 41.37 24.43 68.60 1.68 43.05 15 4 H -0.25 -10.05 6.65 99.48 0.66 -9.39 15 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 15 6 H -0.25 -10.87 6.80 99.48 0.68 -10.19 15 7 C -0.49 -26.96 9.56 23.40 0.22 -26.74 15 8 H 0.05 3.25 8.06 -2.91 -0.02 3.23 15 9 C 0.02 0.95 5.21 -21.31 -0.11 0.83 15 10 C -0.16 -7.00 7.09 22.48 0.16 -6.84 15 11 C -0.17 -6.33 9.82 22.10 0.22 -6.11 15 12 C 0.18 7.06 6.77 39.11 0.26 7.33 15 13 N -0.86 -26.81 8.75 -50.65 -0.44 -27.25 15 14 C -0.19 -7.91 5.88 -20.01 -0.12 -8.03 15 15 C 0.54 19.36 8.24 70.23 0.58 19.93 15 16 O -0.55 -19.55 14.47 19.79 0.29 -19.26 15 17 O -0.51 -14.73 12.70 -56.68 -0.72 -15.45 15 18 C -0.13 -5.74 9.35 23.02 0.22 -5.53 15 19 H 0.29 14.36 8.30 -92.71 -0.77 13.59 15 20 H 0.11 4.77 4.21 -2.91 -0.01 4.76 15 21 H 0.14 4.37 8.06 -2.91 -0.02 4.35 15 22 H 0.41 12.87 5.56 -92.72 -0.52 12.35 15 23 H 0.40 9.77 8.86 -92.71 -0.82 8.95 15 24 H 0.43 7.25 9.11 -74.06 -0.67 6.58 15 25 H 0.11 5.16 7.62 -2.91 -0.02 5.14 15 Total: -1.00 -62.01 221.94 2.18 -59.84 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.82 Total: 28.45 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 1.89 Total: -22.42 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -0.14 Total: -74.20 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.43 Total: -34.71 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.68 Total: 43.05 kcal Total: -62.01 2.18 -59.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307438604.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.148 kcal (2) G-P(sol) polarization free energy of solvation -62.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds