Wall clock time and date at job start Mon Mar 30 2020 02:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99772 * 2 1 4 4 H 1.48499 * 109.47291 * 240.00008 * 3 2 1 5 5 H 1.48495 * 109.46893 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46869 * 119.99902 * 3 2 1 7 7 C 1.37880 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99993 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99780 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47860 * 300.00135 * 9 7 2 11 11 C 1.50703 * 109.47083 * 60.00438 * 9 7 2 12 12 O 1.20826 * 120.00048 * 119.99374 * 11 9 7 13 13 O 1.34231 * 119.99757 * 300.00065 * 11 9 7 14 14 C 1.50707 * 109.47214 * 179.97438 * 9 7 2 15 15 C 1.38227 * 119.62059 * 275.02860 * 14 9 7 16 16 C 1.38627 * 119.15702 * 179.74122 * 15 14 9 17 17 C 1.38669 * 118.42389 * 0.47826 * 16 15 14 18 18 C 1.38186 * 119.16143 * 359.49762 * 17 16 15 19 19 N 1.31856 * 119.61137 * 95.00290 * 14 9 7 20 20 H 0.97000 * 120.00825 * 359.97438 * 1 2 3 21 21 H 0.96706 * 116.99926 * 179.97438 * 13 11 9 22 22 H 1.07997 * 120.41915 * 359.97438 * 15 14 9 23 23 H 1.08008 * 120.78688 * 180.22921 * 16 15 14 24 24 H 1.08002 * 120.42244 * 179.78279 * 17 16 15 25 25 H 1.07996 * 119.61757 * 180.25243 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5572 0.8896 11 6 0.3843 -2.5787 -1.2308 12 8 0.5454 -3.4737 -2.0264 13 8 -0.5665 -1.6553 -1.4427 14 6 2.2305 -3.6446 -0.0018 15 6 2.7536 -4.0949 -1.1994 16 6 3.6578 -5.1456 -1.1889 17 6 3.9960 -5.7133 0.0302 18 6 3.4325 -5.2094 1.1870 19 7 2.5788 -4.2052 1.1397 20 1 -0.4851 0.8400 0.0004 21 1 -1.0972 -1.7478 -2.2458 22 1 2.4644 -3.6315 -2.1311 23 1 4.0856 -5.5160 -2.1089 24 1 4.6945 -6.5357 0.0755 25 1 3.6938 -5.6433 2.1408 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307498777.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:17 Heat of formation + Delta-G solvation = -64.403240 kcal Electronic energy + Delta-G solvation = -13280.607225 eV Core-core repulsion = 10837.884244 eV Total energy + Delta-G solvation = -2442.722981 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.44750 -40.20592 -36.59579 -35.59584 -33.39426 -32.87016 -29.80022 -26.10965 -24.27329 -23.85153 -21.65019 -18.99952 -18.46486 -17.59906 -17.37463 -16.68101 -16.31192 -15.88891 -15.60307 -14.71683 -14.34735 -13.93678 -13.75112 -13.29109 -12.96881 -12.80266 -12.46228 -12.06524 -11.98672 -11.54755 -11.20432 -10.63222 -10.42312 -10.17931 -9.66486 -8.14232 -6.39062 0.37327 0.54884 1.44576 1.45747 1.53441 1.71351 2.40534 2.68397 3.09682 3.13506 3.83393 4.06335 4.13439 4.38846 4.45080 4.70776 4.98364 5.03466 5.12431 5.40139 5.50032 5.66735 5.81188 5.95334 6.08295 6.60376 7.26059 7.28933 7.58847 8.84332 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.035816 B = 0.012210 C = 0.010295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.586368 B = 2292.693284 C = 2719.154459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.094 3.906 10 H 0.048 0.952 11 C 0.490 3.510 12 O -0.581 6.581 13 O -0.449 6.449 14 C 0.133 3.867 15 C -0.159 4.159 16 C -0.088 4.088 17 C -0.175 4.175 18 C 0.076 3.924 19 N -0.516 5.516 20 H 0.271 0.729 21 H 0.376 0.624 22 H 0.127 0.873 23 H 0.161 0.839 24 H 0.175 0.825 25 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.886 -6.034 -1.614 7.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.182 4.182 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.074 0.926 9 C 0.074 3.926 10 H 0.066 0.934 11 C 0.336 3.664 12 O -0.478 6.478 13 O -0.252 6.252 14 C -0.003 4.003 15 C -0.179 4.179 16 C -0.114 4.114 17 C -0.194 4.194 18 C -0.081 4.081 19 N -0.226 5.226 20 H 0.080 0.920 21 H 0.231 0.769 22 H 0.145 0.855 23 H 0.178 0.822 24 H 0.192 0.808 25 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.590 -5.762 -0.667 7.397 hybrid contribution 0.075 0.573 -1.327 1.448 sum 4.665 -5.189 -1.994 7.257 Atomic orbital electron populations 1.69983 1.06449 1.27971 1.43762 1.25778 0.95985 1.02317 0.94090 0.85515 0.78474 0.78368 0.78755 1.19862 1.19826 1.19764 1.20739 0.92700 0.88868 1.55721 0.92648 1.17228 0.91287 0.93000 0.91068 0.93436 1.24751 0.77477 0.76176 0.87948 1.90473 1.70447 1.37247 1.49614 1.85507 1.44602 1.49905 1.45229 1.20950 0.95835 0.94289 0.89264 1.22288 0.97439 0.98927 0.99252 1.21965 0.94882 0.94334 1.00191 1.22453 1.02141 1.02381 0.92455 1.23319 0.92481 0.91893 1.00423 1.67346 1.15048 1.10494 1.29700 0.91969 0.76874 0.85518 0.82167 0.80799 0.79953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.83 10.00 21.45 0.21 -45.62 15 2 C 0.02 1.29 5.23 84.66 0.44 1.73 15 3 Si 0.96 42.12 29.54 68.60 2.03 44.14 15 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 7 C -0.54 -30.17 8.54 25.60 0.22 -29.95 15 8 H 0.06 3.11 7.74 -2.91 -0.02 3.09 15 9 C 0.09 5.05 2.57 -13.03 -0.03 5.02 15 10 H 0.05 2.77 8.14 -2.39 -0.02 2.75 15 11 C 0.49 25.08 7.37 71.24 0.53 25.60 15 12 O -0.58 -29.42 13.87 21.96 0.30 -29.11 15 13 O -0.45 -21.46 9.85 -51.43 -0.51 -21.97 15 14 C 0.13 6.43 5.63 42.55 0.24 6.67 15 15 C -0.16 -6.88 8.27 22.36 0.18 -6.69 15 16 C -0.09 -2.86 10.18 22.47 0.23 -2.63 15 17 C -0.18 -4.92 10.11 22.36 0.23 -4.69 15 18 C 0.08 2.53 11.18 84.67 0.95 3.48 15 19 N -0.52 -23.03 10.27 -183.88 -1.89 -24.92 15 20 H 0.27 13.76 8.31 -92.71 -0.77 12.99 15 21 H 0.38 13.91 9.10 -74.05 -0.67 13.24 15 22 H 0.13 5.84 5.94 -2.91 -0.02 5.83 15 23 H 0.16 3.93 8.06 -2.91 -0.02 3.90 15 24 H 0.17 3.11 8.06 -2.91 -0.02 3.09 15 25 H 0.18 4.49 8.06 -2.91 -0.02 4.46 15 Total: -1.00 -66.04 227.34 3.68 -62.36 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.55 Total: 16.57 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 2.98 Total: -1.46 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.67 Total: -70.53 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.20 Total: -51.08 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -66.04 3.68 -62.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307498777.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.039 kcal (2) G-P(sol) polarization free energy of solvation -66.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds