Wall clock time and date at job start Mon Mar 30 2020 02:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00317 * 2 1 4 4 H 1.48498 * 109.46975 * 270.00215 * 3 2 1 5 5 H 1.48505 * 109.47001 * 30.00212 * 3 2 1 6 6 H 1.48496 * 109.47134 * 149.99648 * 3 2 1 7 7 C 1.37875 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99972 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47039 * 60.00055 * 9 7 2 11 11 C 1.50695 * 109.47231 * 299.99584 * 9 7 2 12 12 O 1.20830 * 119.99953 * 240.00305 * 11 9 7 13 13 O 1.34228 * 119.99581 * 59.99984 * 11 9 7 14 14 C 1.50707 * 109.46780 * 179.97438 * 9 7 2 15 15 C 1.38223 * 119.61967 * 85.00334 * 14 9 7 16 16 C 1.38625 * 119.15978 * 180.27814 * 15 14 9 17 17 C 1.38677 * 118.42126 * 359.46985 * 16 15 14 18 18 C 1.38182 * 119.16110 * 0.48634 * 17 16 15 19 19 N 1.31856 * 119.61465 * 264.97406 * 14 9 7 20 20 H 0.97000 * 120.00076 * 359.97438 * 1 2 3 21 21 H 0.96705 * 116.99504 * 180.02562 * 13 11 9 22 22 H 1.08002 * 120.41617 * 359.97438 * 15 14 9 23 23 H 1.08003 * 120.79223 * 179.72202 * 16 15 14 24 24 H 1.08006 * 120.41702 * 180.22168 * 17 16 15 25 25 H 1.07998 * 119.61686 * 179.76233 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8897 11 6 0.3841 -2.5788 1.2307 12 8 0.5451 -3.4738 2.0263 13 8 -0.5667 -1.6553 1.4425 14 6 2.2303 -3.6446 0.0005 15 6 2.7538 -4.0959 1.1976 16 6 3.6583 -5.1463 1.1860 17 6 3.9955 -5.7135 -0.0337 18 6 3.4306 -5.2097 -1.1898 19 7 2.5774 -4.2052 -1.1414 20 1 -0.4850 0.8400 0.0004 21 1 -1.0973 -1.7478 2.2457 22 1 2.4655 -3.6327 2.1296 23 1 4.0870 -5.5169 2.1054 24 1 4.6942 -6.5358 -0.0799 25 1 3.6909 -5.6433 -2.1440 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307498778.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:20 Heat of formation + Delta-G solvation = -44.030797 kcal Electronic energy + Delta-G solvation = -13279.451649 eV Core-core repulsion = 10837.612084 eV Total energy + Delta-G solvation = -2441.839565 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.76276 -38.44717 -34.69437 -33.68544 -31.81451 -31.17617 -28.06414 -24.15100 -22.78625 -22.18110 -19.84923 -17.05204 -16.49577 -16.08260 -15.76674 -14.92928 -14.52456 -14.06084 -13.92074 -13.07905 -12.72659 -12.40297 -11.97110 -11.38315 -11.36101 -10.97363 -10.72284 -10.13806 -10.07884 -9.68229 -9.38522 -9.01262 -8.66874 -8.44392 -8.09966 -6.15957 -4.32574 1.86127 2.01263 3.23516 3.29722 3.33259 3.66339 4.27093 4.41506 4.66950 5.13442 5.31495 5.40255 5.54663 5.74859 5.94529 6.30815 6.50238 6.71180 6.79547 6.93096 7.24708 7.44374 7.71175 7.76223 7.95971 8.65021 8.79485 9.31759 9.42277 10.83088 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.035809 B = 0.012209 C = 0.010294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.748812 B = 2292.807670 C = 2719.344490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.067 0.933 9 C 0.096 3.904 10 H 0.080 0.920 11 C 0.489 3.511 12 O -0.579 6.579 13 O -0.440 6.440 14 C 0.168 3.832 15 C -0.136 4.136 16 C -0.094 4.094 17 C -0.196 4.196 18 C 0.083 3.917 19 N -0.482 5.482 20 H 0.267 0.733 21 H 0.353 0.647 22 H 0.146 0.854 23 H 0.123 0.877 24 H 0.122 0.878 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.300 -5.064 1.397 6.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.076 3.924 10 H 0.098 0.902 11 C 0.336 3.664 12 O -0.475 6.475 13 O -0.242 6.242 14 C 0.030 3.970 15 C -0.156 4.156 16 C -0.120 4.120 17 C -0.217 4.217 18 C -0.074 4.074 19 N -0.191 5.191 20 H 0.077 0.923 21 H 0.206 0.794 22 H 0.164 0.836 23 H 0.141 0.859 24 H 0.140 0.860 25 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.027 -4.796 0.440 5.688 hybrid contribution 0.539 0.397 1.401 1.552 sum 3.566 -4.399 1.841 5.954 Atomic orbital electron populations 1.69881 1.05470 1.26976 1.43831 1.25063 0.95091 0.99507 0.94701 0.86402 0.79788 0.82391 0.78428 1.20218 1.20930 1.19771 1.20651 0.93119 0.87584 1.54432 0.91442 1.17389 0.91047 0.91880 0.92125 0.90199 1.24965 0.77317 0.76067 0.88072 1.90495 1.70293 1.37124 1.49567 1.85598 1.44587 1.50226 1.43758 1.21203 0.94457 0.93481 0.87818 1.22405 0.95376 0.96945 1.00879 1.21524 0.96568 0.96160 0.97714 1.21923 1.03176 1.02450 0.94107 1.22558 0.93844 0.93234 0.97774 1.67419 1.13197 1.08617 1.29823 0.92300 0.79398 0.83610 0.85911 0.86022 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.02 10.00 55.43 0.55 -21.47 15 2 C 0.06 1.68 5.23 -17.82 -0.09 1.59 15 3 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 15 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.52 -14.00 8.54 -34.44 -0.29 -14.29 15 8 H 0.07 1.83 7.74 -52.49 -0.41 1.42 15 9 C 0.10 2.45 2.57 -94.07 -0.24 2.21 15 10 H 0.08 2.18 8.14 -51.93 -0.42 1.75 15 11 C 0.49 12.15 7.37 36.00 0.27 12.41 15 12 O -0.58 -14.36 13.88 -18.75 -0.26 -14.62 15 13 O -0.44 -10.33 9.85 -39.25 -0.39 -10.71 15 14 C 0.17 3.98 5.63 -82.58 -0.46 3.51 15 15 C -0.14 -2.95 8.27 -39.44 -0.33 -3.28 15 16 C -0.09 -1.66 10.18 -39.28 -0.40 -2.06 15 17 C -0.20 -3.19 10.11 -39.44 -0.40 -3.59 15 18 C 0.08 1.49 11.18 -17.55 -0.20 1.30 15 19 N -0.48 -10.74 10.27 -9.47 -0.10 -10.83 15 20 H 0.27 6.73 8.31 -40.82 -0.34 6.39 15 21 H 0.35 6.52 9.10 45.56 0.41 6.93 15 22 H 0.15 3.29 5.95 -52.49 -0.31 2.98 15 23 H 0.12 1.77 8.06 -52.48 -0.42 1.35 15 24 H 0.12 1.51 8.06 -52.48 -0.42 1.09 15 25 H 0.15 2.06 8.06 -52.49 -0.42 1.64 15 LS Contribution 227.35 15.07 3.43 3.43 Total: -1.00 -29.87 227.35 -5.06 -34.93 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -1.13 Total: 6.06 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.15 Total: -2.20 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.46 Total: -32.30 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.65 Total: -25.33 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -29.87 -5.06 -34.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307498778.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.096 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds