Wall clock time and date at job start Mon Mar 30 2020 02:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00317 * 2 1 4 4 H 1.48498 * 109.46975 * 270.00215 * 3 2 1 5 5 H 1.48505 * 109.47001 * 30.00212 * 3 2 1 6 6 H 1.48496 * 109.47134 * 149.99648 * 3 2 1 7 7 C 1.37875 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99972 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47039 * 60.00055 * 9 7 2 11 11 C 1.50695 * 109.47231 * 299.99584 * 9 7 2 12 12 O 1.20830 * 119.99953 * 240.00305 * 11 9 7 13 13 O 1.34228 * 119.99581 * 59.99984 * 11 9 7 14 14 C 1.50707 * 109.46780 * 179.97438 * 9 7 2 15 15 C 1.38223 * 119.61967 * 85.00334 * 14 9 7 16 16 C 1.38625 * 119.15978 * 180.27814 * 15 14 9 17 17 C 1.38677 * 118.42126 * 359.46985 * 16 15 14 18 18 C 1.38182 * 119.16110 * 0.48634 * 17 16 15 19 19 N 1.31856 * 119.61465 * 264.97406 * 14 9 7 20 20 H 0.97000 * 120.00076 * 359.97438 * 1 2 3 21 21 H 0.96705 * 116.99504 * 180.02562 * 13 11 9 22 22 H 1.08002 * 120.41617 * 359.97438 * 15 14 9 23 23 H 1.08003 * 120.79223 * 179.72202 * 16 15 14 24 24 H 1.08006 * 120.41702 * 180.22168 * 17 16 15 25 25 H 1.07998 * 119.61686 * 179.76233 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8897 11 6 0.3841 -2.5788 1.2307 12 8 0.5451 -3.4738 2.0263 13 8 -0.5667 -1.6553 1.4425 14 6 2.2303 -3.6446 0.0005 15 6 2.7538 -4.0959 1.1976 16 6 3.6583 -5.1463 1.1860 17 6 3.9955 -5.7135 -0.0337 18 6 3.4306 -5.2097 -1.1898 19 7 2.5774 -4.2052 -1.1414 20 1 -0.4850 0.8400 0.0004 21 1 -1.0973 -1.7478 2.2457 22 1 2.4655 -3.6327 2.1296 23 1 4.0870 -5.5169 2.1054 24 1 4.6942 -6.5358 -0.0799 25 1 3.6909 -5.6433 -2.1440 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307498778.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:20 Heat of formation + Delta-G solvation = -64.515306 kcal Electronic energy + Delta-G solvation = -13280.339924 eV Core-core repulsion = 10837.612084 eV Total energy + Delta-G solvation = -2442.727840 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.44686 -40.20668 -36.59612 -35.59672 -33.39419 -32.87086 -29.80090 -26.11252 -24.27333 -23.85285 -21.65089 -19.00108 -18.46666 -17.59983 -17.37381 -16.68124 -16.31411 -15.88827 -15.60332 -14.71923 -14.34655 -13.94108 -13.75388 -13.29096 -12.96891 -12.79672 -12.46663 -12.07658 -11.98343 -11.53998 -11.20145 -10.63183 -10.42637 -10.17958 -9.66577 -8.14582 -6.39218 0.37312 0.54843 1.44129 1.44701 1.54804 1.71175 2.40448 2.68278 3.09641 3.13284 3.83333 4.06321 4.13435 4.38801 4.45056 4.70742 4.98324 5.03410 5.12385 5.40101 5.49977 5.66826 5.81002 5.95290 6.08205 6.60488 7.26006 7.28865 7.58777 8.84227 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.035809 B = 0.012209 C = 0.010294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.748812 B = 2292.807670 C = 2719.344490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.094 3.906 10 H 0.048 0.952 11 C 0.490 3.510 12 O -0.581 6.581 13 O -0.448 6.448 14 C 0.133 3.867 15 C -0.159 4.159 16 C -0.088 4.088 17 C -0.175 4.175 18 C 0.076 3.924 19 N -0.516 5.516 20 H 0.270 0.730 21 H 0.376 0.624 22 H 0.127 0.873 23 H 0.161 0.839 24 H 0.175 0.825 25 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 -6.042 1.601 7.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.182 4.182 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.073 0.927 9 C 0.074 3.926 10 H 0.066 0.934 11 C 0.337 3.663 12 O -0.478 6.478 13 O -0.252 6.252 14 C -0.003 4.003 15 C -0.179 4.179 16 C -0.114 4.114 17 C -0.194 4.194 18 C -0.081 4.081 19 N -0.226 5.226 20 H 0.080 0.920 21 H 0.231 0.769 22 H 0.145 0.855 23 H 0.178 0.822 24 H 0.192 0.808 25 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.597 -5.772 0.658 7.408 hybrid contribution 0.066 0.577 1.320 1.442 sum 4.663 -5.196 1.978 7.256 Atomic orbital electron populations 1.69997 1.06447 1.27887 1.43863 1.25781 0.95990 1.02330 0.94100 0.85453 0.78517 0.78592 0.78515 1.19763 1.19899 1.19832 1.20767 0.92690 0.88859 1.55606 0.92666 1.17233 0.91300 0.93015 0.91079 0.93431 1.24741 0.77478 0.76179 0.87938 1.90474 1.70453 1.37240 1.49611 1.85508 1.44604 1.49898 1.45230 1.20947 0.95835 0.94284 0.89262 1.22288 0.97450 0.98927 0.99264 1.21966 0.94877 0.94340 1.00188 1.22455 1.02138 1.02384 0.92456 1.23318 0.92472 0.91886 1.00431 1.67343 1.15081 1.10497 1.29665 0.91986 0.76872 0.85519 0.82166 0.80797 0.79944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.84 10.00 21.45 0.21 -45.62 15 2 C 0.02 1.27 5.23 84.65 0.44 1.71 15 3 Si 0.96 42.14 29.54 68.60 2.03 44.17 15 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 7 C -0.54 -30.11 8.54 25.60 0.22 -29.90 15 8 H 0.06 3.11 7.74 -2.91 -0.02 3.08 15 9 C 0.09 5.03 2.57 -13.03 -0.03 4.99 15 10 H 0.05 2.77 8.14 -2.39 -0.02 2.75 15 11 C 0.49 25.08 7.37 71.23 0.53 25.61 15 12 O -0.58 -29.41 13.88 21.95 0.30 -29.11 15 13 O -0.45 -21.47 9.85 -51.40 -0.51 -21.97 15 14 C 0.13 6.44 5.63 42.55 0.24 6.68 15 15 C -0.16 -6.89 8.27 22.36 0.19 -6.70 15 16 C -0.09 -2.86 10.18 22.47 0.23 -2.63 15 17 C -0.18 -4.92 10.11 22.36 0.23 -4.69 15 18 C 0.08 2.53 11.18 84.67 0.95 3.48 15 19 N -0.52 -23.02 10.27 -183.88 -1.89 -24.91 15 20 H 0.27 13.72 8.31 -92.71 -0.77 12.95 15 21 H 0.38 13.92 9.10 -74.05 -0.67 13.25 15 22 H 0.13 5.84 5.95 -2.91 -0.02 5.83 15 23 H 0.16 3.93 8.06 -2.91 -0.02 3.91 15 24 H 0.17 3.11 8.06 -2.91 -0.02 3.09 15 25 H 0.18 4.48 8.06 -2.91 -0.02 4.46 15 Total: -1.00 -66.09 227.35 3.68 -62.41 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.55 Total: 16.48 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 2.98 Total: -1.46 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.67 Total: -70.53 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.20 Total: -51.08 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -66.09 3.68 -62.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307498778.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.101 kcal (2) G-P(sol) polarization free energy of solvation -66.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds