Wall clock time and date at job start Mon Mar 30 2020 02:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86797 * 119.99910 * 2 1 4 4 H 1.48503 * 109.47104 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47032 * 120.00162 * 3 2 1 6 6 H 1.48495 * 109.46930 * 240.00133 * 3 2 1 7 7 C 1.39958 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99968 * 154.16142 * 7 2 1 9 9 C 1.41106 * 120.00181 * 334.15742 * 7 2 1 10 10 C 1.40732 * 120.31693 * 334.67911 * 9 7 2 11 11 C 1.37842 * 120.16253 * 180.02562 * 10 9 7 12 12 C 1.38309 * 120.70996 * 359.97438 * 11 10 9 13 13 C 1.39833 * 120.27340 * 0.02562 * 12 11 10 14 14 N 1.36178 * 133.61991 * 180.02562 * 13 12 11 15 15 C 1.30270 * 108.69959 * 179.25617 * 14 13 12 16 16 F 1.35103 * 124.93983 * 180.08416 * 15 14 13 17 17 O 1.34272 * 110.11221 * 0.65951 * 15 14 13 18 18 C 1.34897 * 108.19038 * 359.42637 * 17 15 14 19 19 H 0.97002 * 119.99923 * 174.30115 * 1 2 3 20 20 H 1.08005 * 119.91715 * 0.02562 * 10 9 7 21 21 H 1.08001 * 119.64492 * 180.02562 * 11 10 9 22 22 H 1.08002 * 119.86152 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 1.2774 2.7465 0.0006 5 1 3.0962 1.6964 1.2125 6 1 3.0961 1.6964 -1.2125 7 6 2.0082 -1.2121 -0.0005 8 1 3.0073 -1.2587 -0.4082 9 6 1.4085 -2.3732 0.5316 10 6 0.3993 -2.2684 1.5068 11 6 -0.1840 -3.4048 2.0249 12 6 0.2106 -4.6593 1.5966 13 6 1.2111 -4.7914 0.6287 14 7 1.7970 -5.8611 0.0231 15 6 2.6792 -5.4261 -0.8310 16 9 3.4512 -6.2114 -1.6137 17 8 2.7185 -4.0841 -0.8111 18 6 1.8113 -3.6495 0.0877 19 1 -0.4850 -0.8359 -0.0834 20 1 0.0810 -1.2950 1.8501 21 1 -0.9581 -3.3145 2.7726 22 1 -0.2554 -5.5406 2.0121 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307523053.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:00 Heat of formation + Delta-G solvation = -16.486070 kcal Electronic energy + Delta-G solvation = -12775.013003 eV Core-core repulsion = 10210.907562 eV Total energy + Delta-G solvation = -2564.105441 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.04528 -42.28927 -37.05951 -34.69359 -33.23647 -29.80651 -28.28207 -25.46620 -22.73141 -22.01496 -20.84953 -18.40458 -17.57774 -17.07238 -16.92534 -15.62523 -14.44907 -14.38739 -14.18834 -13.89802 -13.30347 -12.80760 -12.18591 -11.49761 -11.33097 -11.06619 -10.79318 -10.57129 -10.33385 -10.23506 -9.63554 -9.20751 -7.93368 -7.59791 -7.49838 -4.76022 1.61950 2.40705 2.58609 2.93704 3.03559 3.22408 3.27873 3.80929 4.22601 4.28232 5.03452 5.63698 5.92972 6.15365 6.31340 6.47209 6.51833 6.99371 7.12023 7.29620 7.46517 7.57407 7.69424 7.75292 8.04302 8.36336 8.45512 9.71299 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.038940 B = 0.011338 C = 0.009081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.875527 B = 2468.925265 C = 3082.589720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.038 3.962 3 Si 1.069 2.931 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.495 4.495 8 H 0.084 0.916 9 C 0.129 3.871 10 C -0.236 4.236 11 C -0.053 4.053 12 C -0.222 4.222 13 C 0.073 3.927 14 N -0.483 5.483 15 C 0.370 3.630 16 F -0.054 7.054 17 O -0.209 6.209 18 C -0.067 4.067 19 H 0.304 0.696 20 H 0.123 0.877 21 H 0.109 0.891 22 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.004 -0.738 0.288 2.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.186 4.186 3 Si 0.891 3.109 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.521 4.521 8 H 0.102 0.898 9 C 0.125 3.875 10 C -0.256 4.256 11 C -0.073 4.073 12 C -0.243 4.243 13 C -0.039 4.039 14 N -0.225 5.225 15 C 0.147 3.853 16 F -0.034 7.034 17 O -0.101 6.101 18 C -0.116 4.116 19 H 0.118 0.882 20 H 0.141 0.859 21 H 0.127 0.873 22 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.674 0.292 0.376 1.741 hybrid contribution 0.702 -1.446 -0.578 1.708 sum 2.377 -1.154 -0.202 2.650 Atomic orbital electron populations 1.70475 1.08162 1.34824 1.25981 1.27225 0.95587 1.04543 0.91247 0.83572 0.75714 0.73220 0.78418 1.19417 1.19564 1.19807 1.20701 1.03385 0.93979 1.34071 0.89782 1.16575 0.92193 0.87113 0.91594 1.20820 1.04474 0.98030 1.02256 1.20505 0.97458 0.91814 0.97503 1.19349 1.03445 0.96969 1.04507 1.19244 0.99270 0.86069 0.99363 1.70731 1.10253 1.31461 1.10015 1.20848 0.93106 0.78087 0.93234 1.91759 1.72025 1.68379 1.71243 1.84212 1.52635 1.19985 1.53292 1.20441 0.96821 0.97030 0.97292 0.88199 0.85924 0.87324 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.89 12.32 55.55 0.68 -18.20 14 2 C 0.04 0.90 4.93 -17.33 -0.09 0.82 14 3 Si 1.07 19.88 30.00 -169.99 -5.10 14.78 14 4 H -0.27 -4.95 7.11 56.52 0.40 -4.55 14 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 14 6 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 7 C -0.49 -12.51 8.98 -37.85 -0.34 -12.85 14 8 H 0.08 2.11 7.96 -52.49 -0.42 1.69 14 9 C 0.13 3.30 5.30 -106.82 -0.57 2.74 14 10 C -0.24 -5.57 7.96 -38.78 -0.31 -5.88 14 11 C -0.05 -1.14 9.99 -39.70 -0.40 -1.53 14 12 C -0.22 -4.94 10.10 -38.96 -0.39 -5.34 14 13 C 0.07 1.76 7.23 -84.73 -0.61 1.15 14 14 N -0.48 -11.24 11.36 -12.94 -0.15 -11.38 14 15 C 0.37 8.08 10.31 52.10 0.54 8.62 14 16 F -0.05 -1.00 17.32 2.25 0.04 -0.96 14 17 O -0.21 -5.04 10.76 4.14 0.04 -5.00 14 18 C -0.07 -1.71 7.16 -37.92 -0.27 -1.98 14 19 H 0.30 7.61 6.71 -40.82 -0.27 7.33 14 20 H 0.12 2.89 6.48 -52.48 -0.34 2.55 14 21 H 0.11 1.95 8.06 -52.49 -0.42 1.52 14 22 H 0.11 2.15 8.06 -52.49 -0.42 1.73 14 LS Contribution 212.32 15.07 3.20 3.20 Total: -1.00 -26.08 212.32 -4.39 -30.47 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -0.67 Total: 1.35 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.44 Total: -14.26 kcal Atomic # 7 Polarization: -30.13 SS G_CDS: 0.54 Total: -29.59 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: 0.04 Total: -5.00 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.10 Total: 14.78 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -26.08 -4.39 -30.47 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307523053.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.987 kcal (2) G-P(sol) polarization free energy of solvation -26.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds