Wall clock time and date at job start Mon Mar 30 2020 01:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86794 * 120.00599 * 2 1 4 4 H 1.48493 * 109.47687 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47243 * 300.00783 * 3 2 1 6 6 H 1.48506 * 109.46974 * 60.00115 * 3 2 1 7 7 C 1.39888 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99708 * 197.92491 * 7 2 1 9 9 C 1.41350 * 120.00255 * 17.92497 * 7 2 1 10 10 C 1.41051 * 120.06828 * 204.50821 * 9 7 2 11 11 C 1.36250 * 120.36563 * 180.02562 * 10 9 7 12 12 C 1.39169 * 120.33042 * 0.03235 * 11 10 9 13 13 O 1.35141 * 133.59387 * 180.02562 * 12 11 10 14 14 C 1.34297 * 108.26384 * 180.02562 * 13 12 11 15 15 F 1.35099 * 124.84102 * 180.02562 * 14 13 12 16 16 N 1.30213 * 110.31844 * 359.97438 * 14 13 12 17 17 C 1.36244 * 108.71833 * 0.02562 * 16 14 13 18 18 C 1.38963 * 133.65594 * 180.02562 * 17 16 14 19 19 H 0.97002 * 119.99962 * 359.97438 * 1 2 3 20 20 H 1.08000 * 119.81539 * 0.03780 * 10 9 7 21 21 H 1.07998 * 119.82927 * 180.02562 * 11 10 9 22 22 H 1.08001 * 120.30663 * 359.70642 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.7028 1.3462 -0.0006 5 1 1.8841 2.3965 -1.2124 6 1 1.8842 2.3963 1.2126 7 6 2.0081 -1.2115 -0.0005 8 1 3.0488 -1.2343 0.2873 9 6 1.3528 -2.4057 -0.3778 10 6 1.8288 -3.6499 0.0860 11 6 1.2021 -4.8048 -0.2743 12 6 0.0858 -4.7692 -1.1046 13 8 -0.7242 -5.7211 -1.6184 14 6 -1.6608 -5.1172 -2.3678 15 9 -2.6440 -5.7572 -3.0378 16 7 -1.4868 -3.8268 -2.3556 17 6 -0.4046 -3.5389 -1.5797 18 6 0.2284 -2.3561 -1.2171 19 1 -0.4850 0.8401 0.0004 20 1 2.6946 -3.6872 0.7304 21 1 1.5737 -5.7526 0.0862 22 1 -0.1390 -1.4077 -1.5805 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307524263.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:26 Heat of formation + Delta-G solvation = -9.826256 kcal Electronic energy + Delta-G solvation = -12614.158323 eV Core-core repulsion = 10050.341673 eV Total energy + Delta-G solvation = -2563.816650 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.00085 -42.12388 -36.96251 -34.02874 -33.52872 -29.62055 -28.63757 -25.60032 -22.56453 -21.65679 -20.82588 -18.13864 -17.62309 -16.86106 -16.42776 -15.78410 -14.97277 -14.31089 -14.06820 -13.55015 -12.95471 -12.69919 -12.08811 -11.64388 -11.26902 -11.14757 -10.79232 -10.49093 -10.32633 -10.16768 -9.55039 -9.28816 -7.65363 -7.42132 -6.94819 -4.57472 1.68790 2.46440 2.63103 2.98809 3.01915 3.05944 3.31921 3.80834 4.32063 4.39501 5.33651 5.66974 5.96317 6.22509 6.41009 6.46264 6.83124 6.96436 7.18718 7.34158 7.46190 7.60334 7.83066 8.11312 8.45615 8.61413 8.62824 9.99661 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.058431 B = 0.009049 C = 0.008002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.080855 B = 3093.581137 C = 3498.269606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.451 4.451 8 H 0.087 0.913 9 C 0.104 3.896 10 C -0.162 4.162 11 C -0.070 4.070 12 C -0.098 4.098 13 O -0.232 6.232 14 C 0.376 3.624 15 F -0.057 7.057 16 N -0.473 5.473 17 C 0.057 3.943 18 C -0.131 4.131 19 H 0.285 0.715 20 H 0.118 0.882 21 H 0.108 0.892 22 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 -2.867 -0.668 3.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.480 4.480 8 H 0.105 0.895 9 C 0.100 3.900 10 C -0.181 4.181 11 C -0.089 4.089 12 C -0.145 4.145 13 O -0.127 6.127 14 C 0.151 3.849 15 F -0.037 7.037 16 N -0.214 5.214 17 C -0.053 4.053 18 C -0.152 4.152 19 H 0.097 0.903 20 H 0.136 0.864 21 H 0.126 0.874 22 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.692 -2.343 -0.971 2.629 hybrid contribution 0.192 -0.103 0.137 0.257 sum 0.884 -2.446 -0.835 2.732 Atomic orbital electron populations 1.69831 1.07707 1.29852 1.33031 1.25990 0.94798 1.01748 0.92147 0.86181 0.80911 0.80482 0.78773 1.18186 1.19501 1.19827 1.19584 0.98352 0.90803 1.39249 0.89530 1.17447 0.91023 0.92376 0.89120 1.20846 1.02180 0.91646 1.03416 1.19076 0.92943 0.98632 0.98283 1.19726 0.99579 0.85271 1.09927 1.84181 1.36168 1.37584 1.54785 1.20823 0.86282 0.84080 0.93673 1.91750 1.54734 1.81409 1.75769 1.70782 1.19334 1.08756 1.22532 1.19415 0.92649 0.95291 0.97939 1.20459 0.99042 0.94341 1.01332 0.90338 0.86382 0.87361 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.34 10.97 55.54 0.61 -18.73 14 2 C 0.07 1.72 5.13 -17.34 -0.09 1.63 14 3 Si 0.91 17.45 29.59 -169.99 -5.03 12.42 14 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 14 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 14 6 H -0.27 -5.16 7.11 56.52 0.40 -4.75 14 7 C -0.45 -10.96 9.04 -37.78 -0.34 -11.30 14 8 H 0.09 1.96 7.91 -52.48 -0.41 1.55 14 9 C 0.10 2.59 5.57 -106.83 -0.60 2.00 14 10 C -0.16 -3.55 9.71 -39.23 -0.38 -3.93 14 11 C -0.07 -1.49 9.98 -39.95 -0.40 -1.89 14 12 C -0.10 -2.29 7.44 -38.30 -0.29 -2.58 14 13 O -0.23 -5.12 10.77 3.36 0.04 -5.08 14 14 C 0.38 8.04 10.29 52.08 0.54 8.58 14 15 F -0.06 -1.02 17.32 2.25 0.04 -0.98 14 16 N -0.47 -11.41 11.36 -12.94 -0.15 -11.56 14 17 C 0.06 1.43 7.22 -84.71 -0.61 0.82 14 18 C -0.13 -3.40 8.74 -38.50 -0.34 -3.73 14 19 H 0.29 6.42 8.30 -40.82 -0.34 6.08 14 20 H 0.12 2.26 8.06 -52.49 -0.42 1.84 14 21 H 0.11 1.93 8.06 -52.49 -0.42 1.51 14 22 H 0.13 3.63 6.17 -52.49 -0.32 3.30 14 LS Contribution 212.96 15.07 3.21 3.21 Total: -1.00 -26.30 212.96 -4.51 -30.81 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -0.72 Total: 0.33 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -2.50 Total: -10.41 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.46 Total: -30.29 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.04 Total: -5.08 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -26.30 -4.51 -30.81 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307524263.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.979 kcal (2) G-P(sol) polarization free energy of solvation -26.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds