Wall clock time and date at job start Mon Mar 30 2020 01:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86794 * 120.00599 * 2 1 4 4 H 1.48493 * 109.47687 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47243 * 300.00783 * 3 2 1 6 6 H 1.48506 * 109.46974 * 60.00115 * 3 2 1 7 7 C 1.39888 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99708 * 197.92491 * 7 2 1 9 9 C 1.41350 * 120.00255 * 17.92497 * 7 2 1 10 10 C 1.41051 * 120.06828 * 204.50821 * 9 7 2 11 11 C 1.36250 * 120.36563 * 180.02562 * 10 9 7 12 12 C 1.39169 * 120.33042 * 0.03235 * 11 10 9 13 13 O 1.35141 * 133.59387 * 180.02562 * 12 11 10 14 14 C 1.34297 * 108.26384 * 180.02562 * 13 12 11 15 15 F 1.35099 * 124.84102 * 180.02562 * 14 13 12 16 16 N 1.30213 * 110.31844 * 359.97438 * 14 13 12 17 17 C 1.36244 * 108.71833 * 0.02562 * 16 14 13 18 18 C 1.38963 * 133.65594 * 180.02562 * 17 16 14 19 19 H 0.97002 * 119.99962 * 359.97438 * 1 2 3 20 20 H 1.08000 * 119.81539 * 0.03780 * 10 9 7 21 21 H 1.07998 * 119.82927 * 180.02562 * 11 10 9 22 22 H 1.08001 * 120.30663 * 359.70642 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.7028 1.3462 -0.0006 5 1 1.8841 2.3965 -1.2124 6 1 1.8842 2.3963 1.2126 7 6 2.0081 -1.2115 -0.0005 8 1 3.0488 -1.2343 0.2873 9 6 1.3528 -2.4057 -0.3778 10 6 1.8288 -3.6499 0.0860 11 6 1.2021 -4.8048 -0.2743 12 6 0.0858 -4.7692 -1.1046 13 8 -0.7242 -5.7211 -1.6184 14 6 -1.6608 -5.1172 -2.3678 15 9 -2.6440 -5.7572 -3.0378 16 7 -1.4868 -3.8268 -2.3556 17 6 -0.4046 -3.5389 -1.5797 18 6 0.2284 -2.3561 -1.2171 19 1 -0.4850 0.8401 0.0004 20 1 2.6946 -3.6872 0.7304 21 1 1.5737 -5.7526 0.0862 22 1 -0.1390 -1.4077 -1.5805 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307524263.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:26 Heat of formation + Delta-G solvation = -27.077055 kcal Electronic energy + Delta-G solvation = -12614.906374 eV Core-core repulsion = 10050.341673 eV Total energy + Delta-G solvation = -2564.564701 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.60872 -43.90989 -38.74239 -35.83758 -35.31105 -31.42817 -30.44301 -27.42007 -24.31640 -23.45373 -22.63409 -19.89356 -19.34171 -18.58555 -18.21092 -17.55301 -16.62409 -15.97066 -15.70164 -15.31345 -14.65874 -14.44897 -13.80294 -13.41900 -12.89306 -12.83020 -12.48573 -12.29232 -12.07999 -11.81574 -11.32852 -11.05172 -9.48429 -9.22941 -8.71589 -6.43782 -0.07160 0.67720 0.88103 1.43139 1.46594 1.55062 1.59794 2.20372 2.55092 2.61765 3.50309 3.91708 4.23945 4.48947 4.67591 4.75548 5.04204 5.18615 5.41136 5.55832 5.67096 5.80105 5.96545 6.29082 6.63441 6.78618 6.81372 8.25420 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.058431 B = 0.009049 C = 0.008002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.080855 B = 3093.581137 C = 3498.269606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.031 3.969 3 Si 0.987 3.013 4 H -0.247 1.247 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.473 4.473 8 H 0.101 0.899 9 C 0.084 3.916 10 C -0.161 4.161 11 C -0.059 4.059 12 C -0.112 4.112 13 O -0.224 6.224 14 C 0.395 3.605 15 F -0.032 7.032 16 N -0.506 5.506 17 C 0.038 3.962 18 C -0.168 4.168 19 H 0.291 0.709 20 H 0.150 0.850 21 H 0.151 0.849 22 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 -3.428 -0.092 4.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.185 4.185 3 Si 0.807 3.193 4 H -0.170 1.170 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.502 4.502 8 H 0.119 0.881 9 C 0.080 3.920 10 C -0.179 4.179 11 C -0.078 4.078 12 C -0.159 4.159 13 O -0.119 6.119 14 C 0.171 3.829 15 F -0.012 7.012 16 N -0.247 5.247 17 C -0.072 4.072 18 C -0.190 4.190 19 H 0.102 0.898 20 H 0.168 0.832 21 H 0.169 0.831 22 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.871 -2.929 -0.395 3.498 hybrid contribution -0.243 -0.020 -0.062 0.251 sum 1.628 -2.949 -0.457 3.400 Atomic orbital electron populations 1.69915 1.09470 1.31081 1.33644 1.26925 0.95380 1.05194 0.91046 0.85071 0.79849 0.75695 0.78654 1.17030 1.19649 1.19135 1.19975 0.99084 0.91419 1.39686 0.88136 1.17824 0.90943 0.94136 0.89092 1.21191 1.02835 0.90696 1.03212 1.19524 0.91461 1.00236 0.96544 1.20075 1.00464 0.84733 1.10629 1.84186 1.36015 1.37045 1.54637 1.20801 0.85962 0.83657 0.92513 1.91825 1.53522 1.80820 1.75019 1.70735 1.19980 1.10208 1.23781 1.19572 0.93141 0.95991 0.98448 1.20321 1.01045 0.93772 1.03813 0.89821 0.83235 0.83112 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.48 10.97 21.82 0.24 -41.24 14 2 C 0.03 1.47 5.13 85.24 0.44 1.91 14 3 Si 0.99 35.36 29.59 68.60 2.03 37.39 14 4 H -0.25 -8.35 7.11 99.48 0.71 -7.64 14 5 H -0.27 -9.70 7.11 99.48 0.71 -8.99 14 6 H -0.27 -9.21 7.11 99.48 0.71 -8.50 14 7 C -0.47 -22.90 9.04 23.44 0.21 -22.69 14 8 H 0.10 4.42 7.91 -2.91 -0.02 4.40 14 9 C 0.08 4.19 5.57 -21.30 -0.12 4.07 14 10 C -0.16 -6.74 9.71 22.50 0.22 -6.52 14 11 C -0.06 -2.35 9.98 22.03 0.22 -2.13 14 12 C -0.11 -5.10 7.44 23.10 0.17 -4.93 14 13 O -0.22 -9.49 10.77 -10.88 -0.12 -9.60 14 14 C 0.39 16.48 10.29 130.48 1.34 17.83 14 15 F -0.03 -1.10 17.32 44.97 0.78 -0.32 14 16 N -0.51 -24.59 11.36 -309.48 -3.52 -28.11 14 17 C 0.04 1.94 7.22 39.24 0.28 2.22 14 18 C -0.17 -9.02 8.74 22.97 0.20 -8.82 14 19 H 0.29 13.42 8.30 -92.71 -0.77 12.65 14 20 H 0.15 5.24 8.06 -2.91 -0.02 5.21 14 21 H 0.15 4.69 8.06 -2.91 -0.02 4.67 14 22 H 0.11 6.21 6.17 -2.91 -0.02 6.19 14 Total: -1.00 -56.60 212.96 3.65 -52.96 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.26 Total: 7.99 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 2.97 Total: -19.07 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -3.28 Total: -69.34 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.12 Total: -9.60 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.78 Total: -0.32 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Total: -56.60 3.65 -52.96 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307524263.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.881 kcal (2) G-P(sol) polarization free energy of solvation -56.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds