Wall clock time and date at job start Mon Mar 30 2020 02:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.34627 * 124.78911 * 205.73905 * 3 2 1 5 5 C 1.46735 * 124.78530 * 0.02562 * 4 3 2 6 6 O 1.21613 * 119.99896 * 359.69681 * 5 4 3 7 7 O 1.34777 * 120.00082 * 179.42484 * 5 4 3 8 8 C 1.34662 * 117.00334 * 180.27692 * 7 5 4 9 9 H 1.08003 * 119.99610 * 359.97438 * 8 7 5 10 10 C 1.39072 * 120.00226 * 180.02562 * 8 7 5 11 11 N 1.31251 * 119.99812 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 120.00266 * 359.97438 * 10 8 7 13 13 H 1.48494 * 109.47083 * 90.00051 * 12 10 8 14 14 H 1.48499 * 109.47260 * 210.00673 * 12 10 8 15 15 H 1.48509 * 109.47115 * 330.00609 * 12 10 8 16 16 C 1.51124 * 110.42951 * 179.73383 * 4 3 2 17 17 C 1.54520 * 104.94219 * 17.02123 * 16 4 3 18 18 C 1.51129 * 124.78749 * 25.91937 * 3 2 1 19 19 H 0.97002 * 119.99907 * 179.97438 * 11 10 8 20 20 H 1.09006 * 110.34086 * 135.88495 * 16 4 3 21 21 H 1.08992 * 110.34922 * 258.14984 * 16 4 3 22 22 H 1.09000 * 110.93337 * 92.75823 * 17 16 4 23 23 H 1.09001 * 110.92850 * 216.41774 * 17 16 4 24 24 H 1.09001 * 110.49898 * 44.50806 * 18 3 2 25 25 H 1.09005 * 110.12647 * 282.28585 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3357 0.9969 0.4801 5 6 2.8231 2.2351 1.0778 6 8 1.6238 2.4190 1.1611 7 8 3.6812 3.1662 1.5395 8 6 3.1454 4.2766 2.0811 9 1 2.0724 4.3897 2.1300 10 6 3.9736 5.2780 2.5765 11 7 3.4512 6.3604 3.1039 12 14 5.8293 5.0826 2.4912 13 1 6.3281 5.6468 1.2114 14 1 6.4558 5.8040 3.6280 15 1 6.1793 3.6413 2.5664 16 6 4.7999 0.6571 0.3233 17 6 4.8340 -0.4906 -0.7107 18 6 3.4308 -1.1153 -0.5425 19 1 4.0289 7.0587 3.4498 20 1 5.3513 1.5201 -0.0501 21 1 5.2154 0.3233 1.2740 22 1 4.9687 -0.1017 -1.7200 23 1 5.6134 -1.2122 -0.4658 24 1 3.0507 -1.4582 -1.5049 25 1 3.4663 -1.9412 0.1680 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307539196.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:51 Heat of formation + Delta-G solvation = -60.006950 kcal Electronic energy + Delta-G solvation = -12804.495295 eV Core-core repulsion = 10361.962952 eV Total energy + Delta-G solvation = -2442.532343 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.45563 -39.55132 -37.42284 -37.27219 -34.60996 -30.88045 -30.09431 -27.62679 -24.04478 -22.43110 -21.44539 -20.27443 -19.13809 -17.62128 -17.05740 -16.28905 -16.11839 -15.43788 -15.01862 -14.71280 -14.49995 -14.37878 -13.65767 -13.50492 -13.36373 -13.24278 -12.68779 -12.45994 -12.29022 -11.98381 -11.88876 -11.85431 -11.28139 -10.89188 -9.98811 -8.61928 -6.46623 -0.52427 1.35459 1.37915 1.56286 1.58609 1.69282 2.22330 2.30435 2.34324 2.75152 2.89335 3.66275 3.79527 4.20068 4.35960 4.75217 4.79381 4.84701 4.95486 5.09562 5.33930 5.36120 5.41085 5.51181 5.80699 6.38623 6.41273 6.71576 7.44634 8.50631 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.038936 B = 0.010230 C = 0.008177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.947472 B = 2736.500106 C = 3423.358975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.270 3.730 3 C -0.008 4.008 4 C -0.081 4.081 5 C 0.431 3.569 6 O -0.576 6.576 7 O -0.231 6.231 8 C -0.413 4.413 9 H 0.051 0.949 10 C 0.017 3.983 11 N -0.909 5.909 12 Si 0.988 3.012 13 H -0.255 1.255 14 H -0.266 1.266 15 H -0.237 1.237 16 C -0.090 4.090 17 C -0.103 4.103 18 C -0.068 4.068 19 H 0.293 0.707 20 H 0.089 0.911 21 H 0.109 0.891 22 H 0.091 0.909 23 H 0.122 0.878 24 H 0.109 0.891 25 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.169 -15.332 -7.498 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.045 4.045 3 C -0.012 4.012 4 C -0.087 4.087 5 C 0.281 3.719 6 O -0.474 6.474 7 O -0.139 6.139 8 C -0.488 4.488 9 H 0.069 0.931 10 C -0.184 4.184 11 N -0.547 5.547 12 Si 0.805 3.195 13 H -0.180 1.180 14 H -0.190 1.190 15 H -0.159 1.159 16 C -0.127 4.127 17 C -0.140 4.140 18 C -0.105 4.105 19 H 0.104 0.896 20 H 0.107 0.893 21 H 0.127 0.873 22 H 0.109 0.891 23 H 0.140 0.860 24 H 0.127 0.873 25 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.147 -15.075 -7.372 19.610 hybrid contribution -0.346 1.087 0.529 1.257 sum 9.801 -13.988 -6.843 18.400 Atomic orbital electron populations 1.81100 1.13808 1.09487 1.08807 1.25928 0.93319 0.92091 0.93114 1.19272 0.83206 0.98642 1.00095 1.21947 1.00357 0.88830 0.97533 1.21519 0.84674 0.85692 0.80033 1.90756 1.18733 1.79867 1.58062 1.83496 1.38887 1.26724 1.64742 1.20385 0.93619 0.94395 1.40440 0.93119 1.25778 1.06938 0.92465 0.93231 1.69622 1.39932 1.08111 1.37081 0.85030 0.74171 0.81000 0.79281 1.17953 1.19010 1.15935 1.21492 0.87294 1.01098 1.02789 1.22500 0.96033 0.96238 0.99202 1.21474 0.92409 0.93558 1.03067 0.89642 0.89276 0.87280 0.89075 0.85955 0.87291 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -19.10 18.54 19.00 0.35 -18.75 15 2 C 0.27 9.87 13.94 88.33 1.23 11.10 15 3 C -0.01 -0.22 6.02 -19.31 -0.12 -0.34 15 4 C -0.08 -2.64 6.15 -18.34 -0.11 -2.75 15 5 C 0.43 21.11 7.86 70.04 0.55 21.66 15 6 O -0.58 -33.63 14.51 19.47 0.28 -33.34 15 7 O -0.23 -12.16 8.40 12.83 0.11 -12.05 15 8 C -0.41 -25.55 10.12 68.02 0.69 -24.86 15 9 H 0.05 3.65 7.08 -2.91 -0.02 3.62 15 10 C 0.02 0.99 5.50 84.98 0.47 1.45 15 11 N -0.91 -54.57 13.95 21.68 0.30 -54.27 15 12 Si 0.99 41.28 28.62 68.60 1.96 43.24 15 13 H -0.26 -10.00 7.11 99.48 0.71 -9.30 15 14 H -0.27 -10.39 7.11 99.48 0.71 -9.68 15 15 H -0.24 -9.06 7.11 99.48 0.71 -8.36 15 16 C -0.09 -1.85 6.56 30.50 0.20 -1.65 15 17 C -0.10 -1.09 7.14 31.63 0.23 -0.86 15 18 C -0.07 -0.90 6.71 30.50 0.20 -0.70 15 19 H 0.29 15.70 8.31 -92.71 -0.77 14.93 15 20 H 0.09 1.91 8.14 -2.38 -0.02 1.89 15 21 H 0.11 1.93 8.14 -2.39 -0.02 1.92 15 22 H 0.09 0.82 8.14 -2.39 -0.02 0.80 15 23 H 0.12 0.51 8.14 -2.39 -0.02 0.49 15 24 H 0.11 1.05 8.14 -2.39 -0.02 1.03 15 25 H 0.12 1.06 8.14 -2.38 -0.02 1.04 15 Total: -1.00 -81.28 239.55 7.56 -73.72 By element: Atomic # 1 Polarization: -2.83 SS G_CDS: 1.21 Total: -1.62 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 3.34 Total: 3.07 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: 0.65 Total: -73.01 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: 0.39 Total: -45.40 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.96 Total: 43.24 kcal Total: -81.28 7.56 -73.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307539196.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.712 kcal (2) G-P(sol) polarization free energy of solvation -81.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds