Wall clock time and date at job start Mon Mar 30 2020 02:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46841 * 128.29718 * 3 2 1 5 5 C 1.36932 * 120.00206 * 95.88696 * 4 3 2 6 6 H 1.08000 * 119.99926 * 161.99148 * 5 4 3 7 7 C 1.38807 * 120.00208 * 341.71552 * 5 4 3 8 8 N 1.31620 * 119.99678 * 337.68580 * 7 5 4 9 9 Si 1.86797 * 120.00266 * 157.68498 * 7 5 4 10 10 H 1.48497 * 109.47341 * 60.00380 * 9 7 5 11 11 H 1.48503 * 109.47143 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47286 * 299.99826 * 9 7 5 13 13 C 1.46500 * 119.99898 * 275.88417 * 4 3 2 14 14 C 1.50702 * 109.47165 * 270.00557 * 13 4 3 15 15 C 1.35445 * 126.78021 * 89.99826 * 14 13 4 16 16 C 1.41381 * 103.98611 * 179.97438 * 15 14 13 17 17 N 1.30179 * 106.39685 * 359.97438 * 16 15 14 18 18 O 1.20917 * 111.60131 * 359.72643 * 17 16 15 19 19 H 1.09001 * 109.47568 * 8.29626 * 3 2 1 20 20 H 1.08999 * 109.47104 * 248.28833 * 3 2 1 21 21 H 0.97003 * 120.00273 * 179.97438 * 8 7 5 22 22 H 1.09001 * 109.47027 * 29.99832 * 13 4 3 23 23 H 1.09000 * 109.47543 * 150.00183 * 13 4 3 24 24 H 1.07996 * 128.00897 * 359.97438 * 15 14 13 25 25 H 1.08003 * 126.80420 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.8569 -1.0840 5 6 3.4382 2.1578 -0.8278 6 1 4.0581 2.7006 -1.5260 7 6 2.9838 2.7806 0.3264 8 7 1.9118 2.3268 0.9406 9 14 3.8936 4.2628 1.0081 10 1 3.9016 5.3480 -0.0056 11 1 3.2113 4.7399 2.2378 12 1 5.2908 3.8793 1.3338 13 6 3.2176 0.3214 -2.4422 14 6 4.5920 -0.2681 -2.6285 15 6 4.9665 -1.5463 -2.3824 16 6 6.3394 -1.5710 -2.7189 17 7 6.6425 -0.3684 -3.1147 18 8 5.6838 0.3675 -3.0768 19 1 2.9719 -1.0161 -0.1483 20 1 2.9712 0.3810 0.9548 21 1 1.5943 2.7617 1.7475 22 1 2.4663 -0.4532 -2.5960 23 1 3.0654 1.1236 -3.1642 24 1 4.3573 -2.3586 -2.0144 25 1 7.0050 -2.4194 -2.6594 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308427755.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:19 Heat of formation + Delta-G solvation = 97.797054 kcal Electronic energy + Delta-G solvation = -13082.844406 eV Core-core repulsion = 10679.447709 eV Total energy + Delta-G solvation = -2403.396697 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.56627 -38.36273 -36.26800 -34.61595 -33.94064 -32.17902 -29.12040 -27.70826 -24.12065 -24.01217 -21.96061 -19.35642 -18.38707 -18.26646 -17.31502 -16.94239 -15.80944 -15.66051 -15.54168 -14.18002 -14.12824 -13.96247 -13.58767 -13.34481 -13.01967 -12.77499 -12.64470 -12.19081 -11.98472 -11.88563 -11.71169 -11.19979 -10.71755 -10.14702 -9.17071 -7.98976 -5.38356 0.74967 1.50915 1.55272 1.59267 1.62142 2.29222 2.45419 2.51384 2.60743 3.23856 3.72380 3.74561 3.85079 4.01516 4.39149 4.53699 4.77720 4.93646 4.97830 5.05183 5.22478 5.41434 5.67316 6.18410 6.98723 7.32534 7.52488 7.67719 8.05987 9.06910 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.012465 C = 0.009273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.477936 B = 2245.773567 C = 3018.762581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C 0.262 3.738 3 C 0.258 3.742 4 N -0.582 5.582 5 C -0.271 4.271 6 H 0.079 0.921 7 C -0.031 4.031 8 N -0.922 5.922 9 Si 0.959 3.041 10 H -0.282 1.282 11 H -0.299 1.299 12 H -0.279 1.279 13 C 0.213 3.787 14 C -0.028 4.028 15 C -0.237 4.237 16 C -0.008 4.008 17 N -0.413 5.413 18 O 0.065 5.935 19 H 0.112 0.888 20 H 0.094 0.906 21 H 0.253 0.747 22 H 0.108 0.892 23 H 0.073 0.927 24 H 0.198 0.802 25 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.758 -8.421 -4.484 11.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.223 5.223 2 C -0.056 4.056 3 C 0.129 3.871 4 N -0.302 5.302 5 C -0.400 4.400 6 H 0.097 0.903 7 C -0.228 4.228 8 N -0.566 5.566 9 Si 0.788 3.212 10 H -0.208 1.208 11 H -0.225 1.225 12 H -0.205 1.205 13 C 0.085 3.915 14 C -0.095 4.095 15 C -0.259 4.259 16 C -0.186 4.186 17 N -0.122 5.122 18 O 0.005 5.995 19 H 0.130 0.870 20 H 0.112 0.888 21 H 0.062 0.938 22 H 0.126 0.874 23 H 0.092 0.908 24 H 0.215 0.785 25 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.121 -7.707 -4.784 10.943 hybrid contribution 0.117 0.642 0.928 1.135 sum 6.238 -7.065 -3.856 10.183 Atomic orbital electron populations 1.80836 1.15640 1.14216 1.11607 1.30899 0.96645 0.88066 0.90018 1.18472 0.78956 0.95400 0.94304 1.44152 1.73444 1.09002 1.03623 1.19437 1.25259 0.89186 1.06123 0.90319 1.25409 0.96529 1.00716 1.00143 1.70032 1.21360 1.44306 1.20935 0.85465 0.78484 0.79875 0.77336 1.20767 1.22500 1.20525 1.19538 0.86144 0.99000 0.86815 1.26321 0.92639 0.92961 0.97561 1.22931 0.95850 0.98042 1.09055 1.25600 0.96741 0.96153 1.00122 1.73834 1.10876 1.05130 1.22342 1.84779 1.14309 1.37105 1.63304 0.87013 0.88800 0.93781 0.87439 0.90820 0.78512 0.76497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -26.13 18.54 20.01 0.37 -25.76 15 2 C 0.26 11.46 13.62 89.44 1.22 12.68 15 3 C 0.26 9.81 5.41 84.57 0.46 10.26 15 4 N -0.58 -23.74 2.47 -716.91 -1.77 -25.51 15 5 C -0.27 -12.95 9.64 84.03 0.81 -12.14 15 6 H 0.08 3.79 7.93 -2.91 -0.02 3.76 15 7 C -0.03 -1.57 4.83 84.86 0.41 -1.16 15 8 N -0.92 -48.87 9.56 21.65 0.21 -48.67 15 9 Si 0.96 42.11 29.61 68.60 2.03 44.14 15 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 11 H -0.30 -13.43 7.11 99.48 0.71 -12.72 15 12 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 13 C 0.21 6.90 6.24 85.63 0.53 7.43 15 14 C -0.03 -0.87 7.07 25.04 0.18 -0.69 15 15 C -0.24 -5.79 11.09 22.40 0.25 -5.54 15 16 C -0.01 -0.20 12.17 85.71 1.04 0.85 15 17 N -0.41 -13.65 12.07 -59.27 -0.72 -14.36 15 18 O 0.06 2.29 11.20 71.57 0.80 3.09 15 19 H 0.11 3.11 8.12 -2.39 -0.02 3.09 15 20 H 0.09 4.00 6.52 -2.39 -0.02 3.99 15 21 H 0.25 13.54 8.31 -92.71 -0.77 12.77 15 22 H 0.11 2.91 8.07 -2.39 -0.02 2.89 15 23 H 0.07 2.46 8.04 -2.39 -0.02 2.44 15 24 H 0.20 3.39 8.06 -2.91 -0.02 3.37 15 25 H 0.22 3.60 8.06 -2.91 -0.02 3.58 15 Total: -1.00 -62.20 237.94 7.03 -55.17 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: 1.21 Total: 0.22 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 4.90 Total: 11.69 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -1.91 Total: -114.31 kcal Atomic # 8 Polarization: 2.29 SS G_CDS: 0.80 Total: 3.09 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -62.20 7.03 -55.17 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308427755.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.968 kcal (2) G-P(sol) polarization free energy of solvation -62.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds