Wall clock time and date at job start Mon Mar 30 2020 02:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31359 * 1 3 3 Si 1.86799 * 120.00018 * 2 1 4 4 H 1.48505 * 109.47274 * 270.00096 * 3 2 1 5 5 H 1.48491 * 109.47380 * 30.00203 * 3 2 1 6 6 H 1.48499 * 109.47016 * 150.00296 * 3 2 1 7 7 C 1.39061 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99843 * 179.97438 * 7 2 1 9 9 N 1.36760 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99911 * 179.97438 * 9 7 2 11 11 O 1.21837 * 120.00200 * 0.02562 * 10 9 7 12 12 C 1.41374 * 119.99670 * 179.97438 * 10 9 7 13 13 C 1.35696 * 119.99987 * 188.52926 * 12 10 9 14 14 C 1.41715 * 119.99670 * 32.80237 * 13 12 10 15 15 C 1.38142 * 126.94986 * 186.91029 * 14 13 12 16 16 N 1.33316 * 107.56964 * 180.02562 * 15 14 13 17 17 C 1.30827 * 109.80202 * 0.02562 * 16 15 14 18 18 N 1.34699 * 109.44038 * 359.72565 * 17 16 15 19 19 H 0.96996 * 126.45843 * 180.27563 * 18 17 16 20 20 H 0.97011 * 119.99771 * 0.02562 * 1 2 3 21 21 H 0.97003 * 120.00151 * 359.97438 * 9 7 2 22 22 H 1.07999 * 120.00292 * 8.53480 * 12 10 9 23 23 H 1.08004 * 119.99852 * 213.07910 * 13 12 10 24 24 H 1.07996 * 126.21770 * 0.03585 * 15 14 13 25 25 H 1.07994 * 125.27976 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.4951 2.0465 -1.4001 5 1 1.4452 2.6526 0.7000 6 1 3.5452 1.4401 0.7000 7 6 2.0089 -1.2043 -0.0005 8 1 3.0889 -1.2043 -0.0010 9 7 1.3251 -2.3887 -0.0005 10 6 1.9990 -3.5559 -0.0016 11 8 3.2173 -3.5559 -0.0021 12 6 1.2921 -4.7802 -0.0010 13 6 1.9594 -5.9489 0.1722 14 6 3.1118 -5.9914 0.9959 15 6 3.9712 -7.0593 1.1673 16 7 4.9198 -6.6792 2.0234 17 6 4.7089 -5.4437 2.3986 18 7 3.6058 -4.9714 1.7867 19 1 3.2281 -4.0834 1.8844 20 1 -0.4850 0.8402 -0.0004 21 1 0.3550 -2.3887 0.0002 22 1 0.2209 -4.7854 -0.1386 23 1 1.6149 -6.8458 -0.3212 24 1 3.8896 -8.0264 0.6936 25 1 5.3261 -4.8874 3.0885 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379355939.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:43 Heat of formation + Delta-G solvation = 31.296843 kcal Electronic energy + Delta-G solvation = -12906.770579 eV Core-core repulsion = 10500.490217 eV Total energy + Delta-G solvation = -2406.280363 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.78547 -40.27778 -36.31942 -34.59531 -33.47521 -32.90744 -29.83182 -27.27841 -24.53263 -22.28180 -21.90614 -20.56489 -19.94744 -18.68150 -17.53084 -16.52279 -15.97502 -15.75106 -15.34433 -15.32842 -14.89962 -14.27187 -13.89149 -13.58540 -13.45752 -13.00051 -12.50703 -12.15793 -11.63652 -11.20067 -10.98640 -10.63235 -10.29749 -10.09624 -8.62210 -8.57536 -5.98990 -0.31365 1.36358 1.39291 1.51201 1.72899 2.21902 2.23916 2.47583 2.59663 3.24225 3.46656 3.85951 4.24592 4.27332 4.53280 4.60575 4.82838 5.05246 5.29339 5.35575 5.66405 5.84716 5.98926 6.49340 6.57280 7.01952 7.12917 7.45896 8.04190 8.56803 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.054834 B = 0.008209 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.505715 B = 3410.087902 C = 3792.933874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.010 4.010 3 Si 0.995 3.005 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.329 4.329 8 H 0.085 0.915 9 N -0.551 5.551 10 C 0.449 3.551 11 O -0.642 6.642 12 C -0.251 4.251 13 C 0.009 3.991 14 C -0.028 4.028 15 C 0.003 3.997 16 N -0.531 5.531 17 C 0.178 3.822 18 N -0.526 5.526 19 H 0.421 0.579 20 H 0.282 0.718 21 H 0.396 0.604 22 H 0.148 0.852 23 H 0.187 0.813 24 H 0.204 0.796 25 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 -7.411 2.474 7.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.459 4.459 8 H 0.103 0.897 9 N -0.183 5.183 10 C 0.243 3.757 11 O -0.535 6.535 12 C -0.273 4.273 13 C -0.013 4.013 14 C -0.143 4.143 15 C -0.151 4.151 16 N -0.251 5.251 17 C -0.104 4.104 18 N -0.129 5.129 19 H 0.265 0.735 20 H 0.092 0.908 21 H 0.230 0.770 22 H 0.166 0.834 23 H 0.204 0.796 24 H 0.220 0.780 25 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.654 -7.626 2.760 8.277 hybrid contribution -1.032 2.023 -0.394 2.305 sum 0.621 -5.603 2.367 6.114 Atomic orbital electron populations 1.69647 1.07088 1.29868 1.48138 1.26151 0.96477 1.02743 0.95763 0.84883 0.78007 0.76544 0.78697 1.19769 1.19436 1.19415 1.19768 0.93077 0.84002 1.49092 0.89673 1.42106 1.09495 1.05210 1.61526 1.17489 0.87978 0.85136 0.85095 1.90646 1.14814 1.88277 1.59749 1.22071 1.00998 0.92246 1.11982 1.20958 0.90145 0.99213 0.91006 1.19711 1.01994 0.89980 1.02646 1.23469 0.91640 1.00003 0.99998 1.69990 1.26848 1.11947 1.16304 1.25517 0.90409 0.92714 1.01808 1.44063 1.22006 1.14371 1.32501 0.73515 0.90847 0.76954 0.83403 0.79603 0.77960 0.75421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.06 13.05 21.68 0.28 -46.78 15 2 C -0.01 -0.49 5.50 84.96 0.47 -0.02 15 3 Si 1.00 40.95 29.55 68.60 2.03 42.97 15 4 H -0.27 -11.00 7.11 99.48 0.71 -10.30 15 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15 6 H -0.27 -11.06 7.11 99.48 0.71 -10.36 15 7 C -0.33 -17.79 9.67 84.12 0.81 -16.98 15 8 H 0.09 4.88 7.15 -2.91 -0.02 4.86 15 9 N -0.55 -27.24 5.26 -315.31 -1.66 -28.90 15 10 C 0.45 20.62 6.32 85.01 0.54 21.16 15 11 O -0.64 -33.18 12.35 -4.79 -0.06 -33.24 15 12 C -0.25 -8.78 9.72 22.45 0.22 -8.57 15 13 C 0.01 0.27 9.78 22.54 0.22 0.49 15 14 C -0.03 -0.94 5.98 38.98 0.23 -0.71 15 15 C 0.00 0.09 11.92 84.44 1.01 1.10 15 16 N -0.53 -18.21 11.19 -198.30 -2.22 -20.43 15 17 C 0.18 5.85 12.99 180.28 2.34 8.19 15 18 N -0.53 -19.34 4.61 -191.10 -0.88 -20.22 15 19 H 0.42 16.90 6.28 -92.71 -0.58 16.31 15 20 H 0.28 13.63 8.31 -92.70 -0.77 12.86 15 21 H 0.40 18.86 7.85 -92.71 -0.73 18.14 15 22 H 0.15 4.30 8.06 -2.91 -0.02 4.28 15 23 H 0.19 3.68 8.06 -2.91 -0.02 3.65 15 24 H 0.20 4.63 8.06 -2.91 -0.02 4.60 15 25 H 0.23 5.61 8.06 -2.91 -0.02 5.58 15 Total: -1.00 -65.37 231.04 3.25 -62.11 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: -0.07 Total: 39.82 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 5.84 Total: 4.66 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -4.48 Total: -116.33 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.06 Total: -33.24 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Total: -65.37 3.25 -62.11 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379355939.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.412 kcal (2) G-P(sol) polarization free energy of solvation -65.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds