Wall clock time and date at job start Mon Mar 30 2020 02:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31431 * 1 3 3 Si 1.86797 * 120.00193 * 2 1 4 4 H 1.48499 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46955 * 299.99624 * 3 2 1 6 6 H 1.48496 * 109.47070 * 59.99890 * 3 2 1 7 7 C 1.38800 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99816 * 179.97438 * 7 2 1 9 9 O 1.34840 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.34948 * 117.00038 * 179.97438 * 9 7 2 11 11 O 1.21732 * 120.00125 * 0.02562 * 10 9 7 12 12 C 1.41373 * 119.99742 * 179.97438 * 10 9 7 13 13 C 1.35395 * 119.99740 * 180.02562 * 12 10 9 14 14 C 1.46693 * 119.99668 * 180.02562 * 13 12 10 15 15 C 1.46811 * 127.04258 * 359.97352 * 14 13 12 16 16 C 1.34425 * 106.41220 * 180.02562 * 15 14 13 17 17 N 1.36448 * 109.15957 * 359.97438 * 16 15 14 18 18 H 0.96999 * 124.81154 * 180.26505 * 17 16 15 19 19 C 1.34814 * 110.37323 * 0.02562 * 17 16 15 20 20 H 0.97003 * 119.99808 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.00376 * 0.02562 * 12 10 9 22 22 H 1.07990 * 120.00227 * 359.97438 * 13 12 10 23 23 H 1.07998 * 126.79392 * 0.02562 * 15 14 13 24 24 H 1.08002 * 125.41939 * 180.02562 * 16 15 14 25 25 H 1.08002 * 125.93004 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7083 1.3463 -0.0006 5 1 1.8897 2.3963 -1.2126 6 1 1.8896 2.3964 1.2125 7 6 2.0082 -1.2021 0.0005 8 1 3.0882 -1.2021 0.0001 9 8 1.3340 -2.3698 0.0005 10 6 2.0690 -3.5016 0.0005 11 8 3.2847 -3.4379 0.0010 12 6 1.4271 -4.7612 0.0011 13 6 2.1645 -5.8967 0.0016 14 6 1.4985 -7.2037 0.0016 15 6 0.0528 -7.4597 0.0016 16 6 -0.0964 -8.7956 0.0022 17 7 1.1348 -9.3837 0.0020 18 1 1.2912 -10.3410 -0.0014 19 6 2.1031 -8.4456 0.0018 20 1 -0.4850 0.8401 0.0004 21 1 0.3486 -4.8177 0.0011 22 1 3.2429 -5.8403 0.0012 23 1 -0.7349 -6.7208 0.0013 24 1 -1.0406 -9.3200 0.0020 25 1 3.1668 -8.6327 0.0020 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379369940.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:57 Heat of formation + Delta-G solvation = -19.179921 kcal Electronic energy + Delta-G solvation = -12251.436637 eV Core-core repulsion = 9810.674687 eV Total energy + Delta-G solvation = -2440.761950 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.71483 -38.82279 -35.31618 -33.23953 -32.05951 -29.89746 -28.74821 -25.57982 -23.30542 -20.73393 -19.83207 -18.84049 -17.66435 -17.31389 -16.49138 -14.67671 -14.30466 -14.29849 -14.07139 -13.75066 -13.29210 -12.84236 -12.40139 -12.00602 -11.49423 -11.21516 -10.92758 -10.48120 -10.34533 -9.88286 -9.70345 -8.91267 -8.50817 -8.48079 -7.52579 -6.35425 -3.95960 1.43642 2.45498 3.17341 3.24111 3.30611 3.32846 3.37300 4.07785 4.39759 4.90513 5.00547 5.16245 5.26206 5.52364 5.67700 5.85046 6.08956 6.25531 6.63262 6.79830 7.05705 7.17279 7.30934 7.50841 7.54288 8.04818 8.87593 9.13724 9.99480 10.82951 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.088682 B = 0.005743 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.657427 B = 4873.932386 C = 5179.747987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.037 3.963 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.370 4.370 8 H 0.097 0.903 9 O -0.212 6.212 10 C 0.427 3.573 11 O -0.568 6.568 12 C -0.167 4.167 13 C -0.016 4.016 14 C -0.154 4.154 15 C -0.175 4.175 16 C -0.026 4.026 17 N -0.558 5.558 18 H 0.412 0.588 19 C 0.012 3.988 20 H 0.269 0.731 21 H 0.124 0.876 22 H 0.128 0.872 23 H 0.144 0.856 24 H 0.163 0.837 25 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.101 -15.975 -0.003 15.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.167 4.167 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.446 4.446 8 H 0.114 0.886 9 O -0.119 6.119 10 C 0.278 3.722 11 O -0.469 6.469 12 C -0.187 4.187 13 C -0.035 4.035 14 C -0.161 4.161 15 C -0.199 4.199 16 C -0.154 4.154 17 N -0.152 5.152 18 H 0.248 0.752 19 C -0.122 4.122 20 H 0.079 0.921 21 H 0.141 0.859 22 H 0.146 0.854 23 H 0.162 0.838 24 H 0.180 0.820 25 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.004 -15.914 -0.001 15.914 hybrid contribution 0.339 0.375 -0.003 0.505 sum 0.335 -15.540 -0.004 15.543 Atomic orbital electron populations 1.70009 1.06063 1.27552 1.46245 1.25383 0.95820 0.98959 0.96493 0.85604 0.79510 0.80039 0.78059 1.18898 1.20202 1.20194 1.21341 0.92541 0.80176 1.50583 0.88553 1.84006 1.39244 1.13557 1.75108 1.19640 0.86259 0.86317 0.79948 1.90661 1.15462 1.88497 1.52318 1.21155 1.00604 0.90592 1.06335 1.21482 0.99029 0.89119 0.93897 1.19883 0.92755 0.91754 1.11720 1.22195 0.95375 0.94719 1.07632 1.21672 0.88382 0.93869 1.11471 1.41511 1.06048 1.08765 1.58924 0.75248 1.22228 0.94051 0.87981 1.07902 0.92136 0.85850 0.85440 0.83778 0.81967 0.81292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.05 13.67 55.49 0.76 -25.29 15 2 C 0.04 1.09 5.50 -17.52 -0.10 0.99 15 3 Si 0.94 21.90 29.55 -169.99 -5.02 16.88 15 4 H -0.26 -6.06 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.37 -11.46 9.65 30.94 0.30 -11.17 15 8 H 0.10 2.99 6.86 -52.49 -0.36 2.63 15 9 O -0.21 -6.50 9.73 -22.19 -0.22 -6.71 15 10 C 0.43 11.57 7.63 31.92 0.24 11.81 15 11 O -0.57 -16.39 15.36 -19.45 -0.30 -16.69 15 12 C -0.17 -3.60 9.50 -39.40 -0.37 -3.97 15 13 C -0.02 -0.28 9.65 -37.18 -0.36 -0.64 15 14 C -0.15 -2.33 6.26 -103.06 -0.65 -2.98 15 15 C -0.18 -2.41 10.45 -37.46 -0.39 -2.80 15 16 C -0.03 -0.27 11.86 -16.84 -0.20 -0.47 15 17 N -0.56 -5.08 5.90 -12.50 -0.07 -5.16 15 18 H 0.41 2.15 8.96 -40.82 -0.37 1.79 15 19 C 0.01 0.13 11.97 -16.28 -0.19 -0.06 15 20 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.12 2.46 7.08 -52.49 -0.37 2.08 15 22 H 0.13 2.33 7.45 -52.49 -0.39 1.94 15 23 H 0.14 1.93 7.52 -52.49 -0.39 1.53 15 24 H 0.16 1.16 8.06 -52.49 -0.42 0.74 15 25 H 0.17 1.46 8.06 -52.49 -0.42 1.04 15 LS Contribution 240.30 15.07 3.62 3.62 Total: -1.00 -36.24 240.30 -4.81 -41.05 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -1.86 Total: 1.58 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -1.72 Total: -9.28 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.68 Total: -30.44 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.51 Total: -23.40 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -36.24 -4.81 -41.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379369940.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.875 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds