Wall clock time and date at job start Mon Mar 30 2020 02:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31426 * 1 3 3 Si 1.86797 * 120.00322 * 2 1 4 4 H 1.48500 * 109.47135 * 239.99807 * 3 2 1 5 5 H 1.48497 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47418 * 119.99830 * 3 2 1 7 7 C 1.38803 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00218 * 180.02562 * 7 2 1 9 9 O 1.34839 * 119.99754 * 0.02562 * 7 2 1 10 10 C 1.34954 * 117.00026 * 180.02562 * 9 7 2 11 11 O 1.21730 * 119.99430 * 359.97438 * 10 9 7 12 12 C 1.41371 * 120.00244 * 179.97438 * 10 9 7 13 13 C 1.35385 * 120.00168 * 186.46282 * 12 10 9 14 14 C 1.46694 * 119.99733 * 9.25931 * 13 12 10 15 15 C 1.46800 * 127.04523 * 43.31694 * 14 13 12 16 16 C 1.34427 * 106.41861 * 179.73852 * 15 14 13 17 17 N 1.36446 * 109.15197 * 0.26164 * 16 15 14 18 18 H 0.97004 * 124.81267 * 180.02562 * 17 16 15 19 19 C 1.34812 * 110.37747 * 359.97438 * 17 16 15 20 20 H 0.97011 * 119.99714 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.99972 * 6.46224 * 12 10 9 22 22 H 1.07994 * 120.00369 * 189.24887 * 13 12 10 23 23 H 1.08000 * 126.79001 * 359.97438 * 15 14 13 24 24 H 1.07999 * 125.42159 * 180.26110 * 16 15 14 25 25 H 1.07998 * 125.92981 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1021 1.6963 -1.2125 5 1 1.2834 2.7464 -0.0006 6 1 3.1021 1.6964 1.2125 7 6 2.0082 -1.2021 0.0005 8 1 3.0882 -1.2022 0.0010 9 8 1.3339 -2.3698 0.0005 10 6 2.0689 -3.5017 0.0016 11 8 3.2845 -3.4379 0.0021 12 6 1.4270 -4.7613 0.0022 13 6 2.1576 -5.8933 0.1353 14 6 3.5809 -5.8112 0.4810 15 6 4.1972 -4.9407 1.4896 16 6 5.5148 -5.2063 1.4667 17 7 5.7624 -6.1625 0.5253 18 1 6.6390 -6.5236 0.3200 19 6 4.6159 -6.5350 -0.0782 20 1 -0.4850 0.8402 -0.0004 21 1 0.3538 -4.8205 -0.1034 22 1 1.6926 -6.8566 -0.0129 23 1 3.6916 -4.2304 2.1269 24 1 6.2588 -4.7376 2.0937 25 1 4.5225 -7.2744 -0.8598 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379369941.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:00 Heat of formation + Delta-G solvation = -26.460803 kcal Electronic energy + Delta-G solvation = -12868.030915 eV Core-core repulsion = 10426.953242 eV Total energy + Delta-G solvation = -2441.077673 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.62846 -40.66814 -37.34044 -34.39719 -34.21443 -30.95867 -29.62950 -27.57953 -24.82638 -21.70665 -21.43623 -19.93829 -19.73598 -18.99699 -17.78258 -16.42181 -16.28925 -15.99099 -15.07085 -14.59857 -14.42289 -14.39546 -13.82773 -13.51248 -13.05758 -13.00368 -12.67821 -12.23566 -12.15464 -11.89797 -11.05687 -10.63559 -10.45086 -9.04529 -8.61485 -8.46809 -6.22825 0.15370 1.33381 1.41434 1.50161 1.59025 2.19316 2.24961 2.54110 2.68628 3.11988 3.26543 4.18466 4.32906 4.51296 4.64613 4.77179 4.95052 5.12778 5.19930 5.33154 5.48306 5.80024 5.92158 6.12557 6.28316 6.87816 6.97535 6.97775 7.97090 8.74030 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.049444 B = 0.008561 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.155911 B = 3269.801722 C = 3714.431986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.012 4.012 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.409 4.409 8 H 0.078 0.922 9 O -0.260 6.260 10 C 0.421 3.579 11 O -0.551 6.551 12 C -0.234 4.234 13 C 0.046 3.954 14 C -0.208 4.208 15 C -0.150 4.150 16 C -0.039 4.039 17 N -0.546 5.546 18 H 0.430 0.570 19 C 0.035 3.965 20 H 0.276 0.724 21 H 0.141 0.859 22 H 0.181 0.819 23 H 0.092 0.908 24 H 0.179 0.821 25 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.040 -12.505 0.500 15.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.211 4.211 3 Si 0.837 3.163 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.485 4.485 8 H 0.096 0.904 9 O -0.171 6.171 10 C 0.273 3.727 11 O -0.449 6.449 12 C -0.253 4.253 13 C 0.027 3.973 14 C -0.216 4.216 15 C -0.175 4.175 16 C -0.166 4.166 17 N -0.143 5.143 18 H 0.269 0.731 19 C -0.099 4.099 20 H 0.086 0.914 21 H 0.158 0.842 22 H 0.198 0.802 23 H 0.110 0.890 24 H 0.196 0.804 25 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 9.321 -12.360 0.498 15.489 hybrid contribution 0.293 1.013 0.032 1.055 sum 9.614 -11.347 0.530 14.882 Atomic orbital electron populations 1.70089 1.07747 1.29125 1.47871 1.26559 0.96876 1.02415 0.95260 0.84682 0.77526 0.74431 0.79646 1.18711 1.18409 1.18669 1.21323 0.91998 0.81619 1.53543 0.90385 1.84040 1.40540 1.14506 1.77969 1.20803 0.86805 0.87022 0.78093 1.90728 1.15531 1.88227 1.50438 1.21387 1.01380 0.89709 1.12872 1.22207 0.91016 0.97572 0.86533 1.20009 0.93728 1.03739 1.04116 1.21678 0.94542 0.99634 1.01633 1.21703 0.96822 0.98586 0.99502 1.41334 1.09723 1.32839 1.30420 0.73063 1.22564 0.84386 1.02210 1.00726 0.91441 0.84168 0.80217 0.88957 0.80380 0.77618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.06 13.67 21.63 0.30 -56.77 15 2 C -0.01 -0.74 5.50 84.89 0.47 -0.28 15 3 Si 1.02 45.90 29.55 68.60 2.03 47.93 15 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 15 5 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15 7 C -0.41 -26.43 9.65 67.96 0.66 -25.77 15 8 H 0.08 5.08 6.86 -2.91 -0.02 5.06 15 9 O -0.26 -16.73 9.73 9.21 0.09 -16.64 15 10 C 0.42 23.20 7.28 68.59 0.50 23.70 15 11 O -0.55 -31.28 10.99 19.09 0.21 -31.07 15 12 C -0.23 -9.81 9.97 22.38 0.22 -9.58 15 13 C 0.05 1.48 10.19 23.82 0.24 1.73 15 14 C -0.21 -7.25 4.80 -18.85 -0.09 -7.34 15 15 C -0.15 -5.94 7.95 23.64 0.19 -5.75 15 16 C -0.04 -1.18 11.86 83.10 0.99 -0.19 15 17 N -0.55 -12.65 5.90 -193.45 -1.14 -13.79 15 18 H 0.43 6.01 8.96 -92.70 -0.83 5.18 15 19 C 0.04 0.90 11.97 84.21 1.01 1.91 15 20 H 0.28 15.71 8.31 -92.70 -0.77 14.94 15 21 H 0.14 5.29 8.06 -2.91 -0.02 5.26 15 22 H 0.18 3.74 8.06 -2.91 -0.02 3.71 15 23 H 0.09 4.25 7.68 -2.91 -0.02 4.23 15 24 H 0.18 4.35 8.06 -2.91 -0.02 4.33 15 25 H 0.21 3.24 8.06 -2.91 -0.02 3.22 15 Total: -1.00 -83.39 234.36 6.04 -77.35 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.38 Total: 14.59 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 4.18 Total: -21.58 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -0.85 Total: -70.56 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: 0.30 Total: -47.72 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -83.39 6.04 -77.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379369941.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.886 kcal (2) G-P(sol) polarization free energy of solvation -83.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds