Wall clock time and date at job start Mon Mar 30 2020 02:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 119.99907 * 2 1 4 4 H 1.48493 * 109.47256 * 270.00287 * 3 2 1 5 5 H 1.48493 * 109.46787 * 30.00338 * 3 2 1 6 6 H 1.48502 * 109.46906 * 150.00345 * 3 2 1 7 7 C 1.38655 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00392 * 179.97438 * 7 2 1 9 9 O 1.34837 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.35760 * 116.99569 * 185.05707 * 9 7 2 11 11 C 1.39008 * 119.99168 * 174.18227 * 10 9 7 12 12 C 1.38199 * 120.23135 * 179.72125 * 11 10 9 13 13 C 1.38041 * 120.22092 * 0.55489 * 12 11 10 14 14 C 1.39631 * 119.99060 * 359.72435 * 13 12 11 15 15 C 1.47650 * 120.11990 * 180.02562 * 14 13 12 16 16 N 1.29333 * 119.99915 * 359.97392 * 15 14 13 17 17 O 1.41595 * 120.00481 * 180.02562 * 16 15 14 18 18 C 1.38584 * 119.99875 * 354.45951 * 10 9 7 19 19 H 0.96997 * 120.00528 * 359.97438 * 1 2 3 20 20 H 1.07999 * 119.88343 * 359.97438 * 11 10 9 21 21 H 1.08000 * 119.88856 * 180.27560 * 12 11 10 22 22 H 1.08006 * 120.00432 * 179.74729 * 13 12 11 23 23 H 1.07995 * 120.00556 * 179.97438 * 15 14 13 24 24 H 0.96698 * 114.00498 * 179.97438 * 17 16 15 25 25 H 1.07996 * 120.11199 * 359.97179 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6525 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0701 -3.5047 0.1056 11 6 1.4346 -4.7343 0.2337 12 6 2.1783 -5.8946 0.3363 13 6 3.5576 -5.8392 0.3237 14 6 4.2056 -4.6085 0.2011 15 6 5.6807 -4.5460 0.1867 16 7 6.3750 -5.6324 0.2882 17 8 7.7896 -5.5726 0.2749 18 6 3.4543 -3.4379 0.0918 19 1 -0.4851 0.8400 0.0004 20 1 0.3559 -4.7835 0.2491 21 1 1.6788 -6.8474 0.4312 22 1 4.1354 -6.7478 0.4082 23 1 6.1800 -3.5931 0.0915 24 1 8.2206 -6.4344 0.3564 25 1 3.9497 -2.4831 -0.0036 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379371360.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:53 Heat of formation + Delta-G solvation = 6.148659 kcal Electronic energy + Delta-G solvation = -12449.375419 eV Core-core repulsion = 10009.711798 eV Total energy + Delta-G solvation = -2439.663621 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.12533 -37.11593 -36.19091 -33.22182 -32.24336 -29.85517 -28.71439 -25.40599 -23.34968 -21.68079 -19.89515 -18.15582 -17.33590 -16.82493 -15.25876 -15.08963 -14.60288 -14.25461 -13.81954 -13.67199 -13.42925 -12.83634 -12.48290 -11.73123 -11.61302 -11.03519 -10.88990 -10.87317 -10.48052 -9.99603 -9.82783 -9.48337 -8.87578 -8.06718 -7.33746 -6.49193 -4.09336 1.28216 2.24067 2.88182 3.11342 3.12425 3.16451 3.17093 3.93128 4.52857 5.00463 5.04078 5.20004 5.58009 5.71991 5.86236 6.08741 6.15048 6.51013 6.67946 6.70681 6.99507 7.14693 7.19854 7.31591 7.65222 7.83123 7.94061 8.96064 9.63635 10.68525 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.034403 B = 0.008381 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.695304 B = 3339.938457 C = 4141.706085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.041 3.959 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.395 4.395 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.147 3.853 11 C -0.169 4.169 12 C -0.086 4.086 13 C -0.168 4.168 14 C -0.027 4.027 15 C 0.164 3.836 16 N -0.343 5.343 17 O -0.424 6.424 18 C -0.198 4.198 19 H 0.271 0.729 20 H 0.121 0.879 21 H 0.118 0.882 22 H 0.117 0.883 23 H 0.118 0.882 24 H 0.400 0.600 25 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.541 -6.648 0.485 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.471 4.471 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.093 3.907 11 C -0.189 4.189 12 C -0.104 4.104 13 C -0.189 4.189 14 C -0.029 4.029 15 C -0.046 4.046 16 N -0.086 5.086 17 O -0.330 6.330 18 C -0.220 4.220 19 H 0.081 0.919 20 H 0.139 0.861 21 H 0.136 0.864 22 H 0.135 0.865 23 H 0.135 0.865 24 H 0.247 0.753 25 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.066 -6.761 0.500 9.792 hybrid contribution 1.074 1.113 -0.039 1.547 sum 8.140 -5.648 0.462 9.918 Atomic orbital electron populations 1.70029 1.05972 1.27777 1.45789 1.25280 0.95837 0.98832 0.96411 0.85718 0.78956 0.80058 0.78762 1.19837 1.20227 1.19143 1.21312 0.91789 0.80785 1.53250 0.89023 1.84012 1.33984 1.11313 1.78575 1.19179 0.89780 0.88391 0.93312 1.20431 0.99957 0.90296 1.08240 1.20641 0.93450 0.97022 0.99286 1.20814 0.94223 0.96402 1.07437 1.18016 0.87797 0.94088 1.02973 1.24479 0.93625 0.95301 0.91177 1.76493 0.89429 1.26658 1.15989 1.88411 1.13349 1.36017 1.95200 1.21216 0.93771 0.97767 1.09206 0.91941 0.86096 0.86438 0.86481 0.86465 0.75264 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.70 13.67 55.48 0.76 -23.94 15 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 15 3 Si 0.94 20.04 29.55 -169.99 -5.02 15.02 15 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 7 C -0.40 -10.69 9.48 30.89 0.29 -10.40 15 8 H 0.09 2.27 5.20 -52.49 -0.27 2.00 15 9 O -0.18 -4.83 9.76 0.00 0.00 -4.83 15 10 C 0.15 3.40 6.64 -39.17 -0.26 3.14 15 11 C -0.17 -3.40 9.98 -39.31 -0.39 -3.79 15 12 C -0.09 -1.48 10.02 -39.67 -0.40 -1.87 15 13 C -0.17 -2.94 9.57 -39.13 -0.37 -3.32 15 14 C -0.03 -0.51 5.87 -105.06 -0.62 -1.12 15 15 C 0.16 2.76 10.90 -14.76 -0.16 2.59 15 16 N -0.34 -5.61 11.23 32.13 0.36 -5.25 15 17 O -0.42 -5.96 14.95 -11.47 -0.17 -6.13 15 18 C -0.20 -4.13 8.90 -38.98 -0.35 -4.48 15 19 H 0.27 7.12 8.31 -40.82 -0.34 6.79 15 20 H 0.12 2.30 8.06 -52.49 -0.42 1.88 15 21 H 0.12 1.63 8.06 -52.49 -0.42 1.20 15 22 H 0.12 1.87 7.55 -52.48 -0.40 1.48 15 23 H 0.12 1.80 8.06 -52.49 -0.42 1.38 15 24 H 0.40 3.47 9.28 45.56 0.42 3.90 15 25 H 0.13 2.74 5.63 -52.49 -0.30 2.44 15 LS Contribution 237.50 15.07 3.58 3.58 Total: -1.00 -30.68 237.50 -3.79 -34.47 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -0.95 Total: 5.32 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -2.35 Total: -18.23 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 1.12 Total: -29.20 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -0.17 Total: -10.96 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.68 -3.79 -34.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379371360.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.622 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds