Wall clock time and date at job start Mon Mar 30 2020 02:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31227 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48494 * 109.47047 * 240.00059 * 3 2 1 5 5 H 1.48495 * 109.47192 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46712 * 120.00321 * 3 2 1 7 7 C 1.39142 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99482 * 186.92237 * 7 2 1 9 9 N 1.37081 * 120.00232 * 6.92397 * 7 2 1 10 10 C 1.36193 * 125.74949 * 23.62188 * 9 7 2 11 11 C 1.35502 * 108.91068 * 179.97438 * 10 9 7 12 12 C 1.39942 * 108.02401 * 359.73626 * 11 10 9 13 13 C 1.38209 * 125.74777 * 203.59411 * 9 7 2 14 14 C 1.41343 * 126.28947 * 0.02562 * 13 9 7 15 15 C 1.35909 * 119.99835 * 56.45587 * 14 13 9 16 16 C 1.41135 * 120.00117 * 8.02521 * 15 14 13 17 17 O 1.21726 * 120.00085 * 5.89039 * 16 15 14 18 18 O 1.35012 * 120.00010 * 185.88894 * 16 15 14 19 19 H 0.96999 * 120.00155 * 359.97438 * 1 2 3 20 20 H 1.08003 * 125.54689 * 359.97438 * 10 9 7 21 21 H 1.08004 * 125.99192 * 180.02562 * 11 10 9 22 22 H 1.08004 * 126.43003 * 180.28277 * 12 11 10 23 23 H 1.07995 * 120.00145 * 236.72034 * 14 13 9 24 24 H 1.08000 * 120.00041 * 188.03188 * 15 14 13 25 25 H 0.96705 * 114.00592 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2462 1.6178 0.0000 4 1 3.0999 1.6964 -1.2125 5 1 1.2812 2.7464 0.0006 6 1 3.1000 1.6963 1.2125 7 6 2.0079 -1.2050 -0.0005 8 1 3.0821 -1.2084 0.1122 9 7 1.3300 -2.3878 -0.1442 10 6 0.1090 -2.5392 -0.7280 11 6 -0.2382 -3.8484 -0.6867 12 6 0.7979 -4.5516 -0.0620 13 6 1.7708 -3.6276 0.2786 14 6 2.9932 -3.9024 0.9330 15 6 3.3034 -3.2613 2.0905 16 6 2.3398 -2.4514 2.7287 17 8 1.2001 -2.4113 2.3031 18 8 2.6822 -1.7209 3.8114 19 1 -0.4850 0.8400 0.0004 20 1 -0.4859 -1.7451 -1.1546 21 1 -1.1522 -4.2751 -1.0728 22 1 0.8311 -5.6153 0.1222 23 1 3.6825 -4.6187 0.5109 24 1 4.2874 -3.3715 2.5218 25 1 1.9561 -1.1989 4.1794 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383476186.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:18 Heat of formation + Delta-G solvation = -13.860510 kcal Electronic energy + Delta-G solvation = -13644.488163 eV Core-core repulsion = 11203.956880 eV Total energy + Delta-G solvation = -2440.531283 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.91425 -38.69602 -35.11337 -33.50910 -32.68645 -29.99990 -27.17058 -24.80585 -23.50313 -19.99180 -19.29708 -18.66990 -17.38182 -16.65129 -15.70372 -14.73402 -14.50878 -14.21443 -13.48777 -12.76342 -12.64979 -12.23790 -11.87501 -11.65882 -11.23912 -10.90352 -10.68516 -10.60909 -10.45410 -10.34601 -9.40051 -9.16929 -8.75036 -7.50810 -6.67693 -6.15078 -4.29449 1.70906 2.98416 3.04330 3.06719 3.77393 3.89215 4.17244 4.33206 4.51017 5.06337 5.30902 5.89380 6.07240 6.41406 6.72289 6.86319 7.00300 7.09558 7.12678 7.31365 7.40592 7.68457 7.74349 7.98611 8.58359 8.66622 8.98400 9.23685 9.70994 10.36814 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.026824 B = 0.018313 C = 0.012934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.587509 B = 1528.562198 C = 2164.376432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.051 3.949 3 Si 0.930 3.070 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.337 4.337 8 H 0.099 0.901 9 N -0.203 5.203 10 C 0.010 3.990 11 C -0.254 4.254 12 C -0.195 4.195 13 C -0.076 4.076 14 C 0.069 3.931 15 C -0.244 4.244 16 C 0.492 3.508 17 O -0.462 6.462 18 O -0.531 6.531 19 H 0.277 0.723 20 H 0.157 0.843 21 H 0.107 0.893 22 H 0.108 0.892 23 H 0.124 0.876 24 H 0.123 0.877 25 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 -1.409 2.374 5.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.160 4.160 3 Si 0.754 3.246 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.117 0.883 9 N 0.142 4.858 10 C -0.133 4.133 11 C -0.277 4.277 12 C -0.221 4.221 13 C -0.189 4.189 14 C 0.049 3.951 15 C -0.265 4.265 16 C 0.336 3.664 17 O -0.348 6.348 18 O -0.342 6.342 19 H 0.088 0.912 20 H 0.175 0.825 21 H 0.125 0.875 22 H 0.126 0.874 23 H 0.141 0.859 24 H 0.140 0.860 25 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 4.701 -1.144 2.136 5.289 hybrid contribution -0.096 1.191 0.427 1.269 sum 4.605 0.047 2.564 5.271 Atomic orbital electron populations 1.69862 1.06327 1.28516 1.41011 1.25488 0.95567 1.00245 0.94704 0.85946 0.79240 0.79774 0.79609 1.19122 1.20178 1.19221 1.19693 0.92743 0.82250 1.51909 0.88338 1.39951 1.11984 1.03533 1.30359 1.21843 0.89711 0.96465 1.05314 1.20301 1.00572 0.94015 1.12833 1.20599 0.96383 0.96101 1.09061 1.17697 0.98967 0.86884 1.15321 1.20643 0.92477 0.92029 0.89927 1.21110 0.99795 1.06421 0.99166 1.19515 0.89010 0.79271 0.78562 1.91128 1.21455 1.60392 1.61779 1.85033 1.45188 1.58596 1.45386 0.91195 0.82533 0.87466 0.87361 0.85878 0.85952 0.75097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.44 10.90 55.50 0.60 -21.83 15 2 C 0.05 1.32 5.39 -17.47 -0.09 1.23 15 3 Si 0.93 19.69 29.56 -169.99 -5.02 14.66 15 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 7 C -0.34 -9.06 7.32 -14.87 -0.11 -9.17 15 8 H 0.10 2.56 7.63 -52.48 -0.40 2.16 15 9 N -0.20 -5.53 1.90 -59.52 -0.11 -5.65 15 10 C 0.01 0.27 9.99 -16.59 -0.17 0.10 15 11 C -0.25 -6.43 10.81 -39.92 -0.43 -6.87 15 12 C -0.20 -4.75 10.87 -38.87 -0.42 -5.18 15 13 C -0.08 -1.88 4.40 -83.73 -0.37 -2.25 15 14 C 0.07 1.40 9.54 -39.24 -0.37 1.03 15 15 C -0.24 -4.86 9.60 -39.32 -0.38 -5.24 15 16 C 0.49 11.04 6.97 31.83 0.22 11.26 15 17 O -0.46 -12.37 13.03 -19.44 -0.25 -12.63 15 18 O -0.53 -10.11 13.54 -41.35 -0.56 -10.67 15 19 H 0.28 6.97 8.30 -40.82 -0.34 6.63 15 20 H 0.16 4.37 6.45 -52.48 -0.34 4.03 15 21 H 0.11 2.42 8.06 -52.48 -0.42 2.00 15 22 H 0.11 2.30 8.06 -52.48 -0.42 1.88 15 23 H 0.12 1.99 8.06 -52.49 -0.42 1.56 15 24 H 0.12 1.99 8.06 -52.49 -0.42 1.57 15 25 H 0.39 6.19 8.98 45.56 0.41 6.60 15 LS Contribution 228.72 15.07 3.45 3.45 Total: -1.00 -31.77 228.72 -5.18 -36.95 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -1.16 Total: 10.79 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.12 Total: -15.07 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.49 Total: -27.48 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.81 Total: -23.30 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -31.77 -5.18 -36.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383476186.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.087 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds