Wall clock time and date at job start Mon Mar 30 2020 02:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31227 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48494 * 109.47047 * 240.00059 * 3 2 1 5 5 H 1.48495 * 109.47192 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46712 * 120.00321 * 3 2 1 7 7 C 1.39142 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99482 * 186.92237 * 7 2 1 9 9 N 1.37081 * 120.00232 * 6.92397 * 7 2 1 10 10 C 1.36193 * 125.74949 * 23.62188 * 9 7 2 11 11 C 1.35502 * 108.91068 * 179.97438 * 10 9 7 12 12 C 1.39942 * 108.02401 * 359.73626 * 11 10 9 13 13 C 1.38209 * 125.74777 * 203.59411 * 9 7 2 14 14 C 1.41343 * 126.28947 * 0.02562 * 13 9 7 15 15 C 1.35909 * 119.99835 * 56.45587 * 14 13 9 16 16 C 1.41135 * 120.00117 * 8.02521 * 15 14 13 17 17 O 1.21726 * 120.00085 * 5.89039 * 16 15 14 18 18 O 1.35012 * 120.00010 * 185.88894 * 16 15 14 19 19 H 0.96999 * 120.00155 * 359.97438 * 1 2 3 20 20 H 1.08003 * 125.54689 * 359.97438 * 10 9 7 21 21 H 1.08004 * 125.99192 * 180.02562 * 11 10 9 22 22 H 1.08004 * 126.43003 * 180.28277 * 12 11 10 23 23 H 1.07995 * 120.00145 * 236.72034 * 14 13 9 24 24 H 1.08000 * 120.00041 * 188.03188 * 15 14 13 25 25 H 0.96705 * 114.00592 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2462 1.6178 0.0000 4 1 3.0999 1.6964 -1.2125 5 1 1.2812 2.7464 0.0006 6 1 3.1000 1.6963 1.2125 7 6 2.0079 -1.2050 -0.0005 8 1 3.0821 -1.2084 0.1122 9 7 1.3300 -2.3878 -0.1442 10 6 0.1090 -2.5392 -0.7280 11 6 -0.2382 -3.8484 -0.6867 12 6 0.7979 -4.5516 -0.0620 13 6 1.7708 -3.6276 0.2786 14 6 2.9932 -3.9024 0.9330 15 6 3.3034 -3.2613 2.0905 16 6 2.3398 -2.4514 2.7287 17 8 1.2001 -2.4113 2.3031 18 8 2.6822 -1.7209 3.8114 19 1 -0.4850 0.8400 0.0004 20 1 -0.4859 -1.7451 -1.1546 21 1 -1.1522 -4.2751 -1.0728 22 1 0.8311 -5.6153 0.1222 23 1 3.6825 -4.6187 0.5109 24 1 4.2874 -3.3715 2.5218 25 1 1.9561 -1.1989 4.1794 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383476186.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:18 Heat of formation + Delta-G solvation = -34.619809 kcal Electronic energy + Delta-G solvation = -13645.388354 eV Core-core repulsion = 11203.956880 eV Total energy + Delta-G solvation = -2441.431474 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.75275 -40.47582 -36.79462 -35.42064 -34.40766 -31.95603 -28.98672 -26.77523 -25.24238 -21.82605 -21.15963 -20.49617 -19.10581 -18.43834 -17.61672 -16.46538 -16.24800 -15.97997 -15.17149 -14.58073 -14.44522 -14.03487 -13.63898 -13.51257 -12.95029 -12.61636 -12.59838 -12.36557 -12.20384 -12.16289 -11.22180 -11.06003 -10.40495 -9.46292 -8.59923 -8.06888 -6.30467 0.07025 1.30312 1.32558 1.44637 1.95250 2.13112 2.40421 2.60923 2.78000 3.11348 3.46066 4.39483 4.58217 4.77340 4.88632 5.07017 5.07903 5.23824 5.31011 5.63853 5.75858 5.81163 5.83812 6.03243 6.61180 6.77447 7.29453 7.32221 7.76124 8.46284 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.026824 B = 0.018313 C = 0.012934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.587509 B = 1528.562198 C = 2164.376432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.006 3.994 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.360 4.360 8 H 0.103 0.897 9 N -0.219 5.219 10 C -0.029 4.029 11 C -0.265 4.265 12 C -0.209 4.209 13 C -0.081 4.081 14 C 0.058 3.942 15 C -0.235 4.235 16 C 0.487 3.513 17 O -0.514 6.514 18 O -0.519 6.519 19 H 0.279 0.721 20 H 0.138 0.862 21 H 0.124 0.876 22 H 0.138 0.862 23 H 0.174 0.826 24 H 0.168 0.832 25 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.895 -1.638 3.156 7.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.201 4.201 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.121 0.879 9 N 0.126 4.874 10 C -0.171 4.171 11 C -0.288 4.288 12 C -0.234 4.234 13 C -0.195 4.195 14 C 0.039 3.961 15 C -0.255 4.255 16 C 0.334 3.666 17 O -0.404 6.404 18 O -0.331 6.331 19 H 0.089 0.911 20 H 0.155 0.845 21 H 0.142 0.858 22 H 0.156 0.844 23 H 0.191 0.809 24 H 0.185 0.815 25 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 6.923 -1.379 2.932 7.644 hybrid contribution -0.762 1.199 0.291 1.450 sum 6.161 -0.180 3.223 6.956 Atomic orbital electron populations 1.69999 1.08014 1.29426 1.42090 1.26506 0.96316 1.03598 0.93719 0.84918 0.77978 0.75115 0.80019 1.18032 1.19686 1.18492 1.19972 0.93012 0.82854 1.52936 0.87935 1.40144 1.11993 1.04469 1.30827 1.21814 0.90853 0.96954 1.07496 1.20596 1.01657 0.93531 1.13040 1.21006 0.95896 0.97615 1.08902 1.18471 1.00524 0.86150 1.14331 1.21159 0.91617 0.93180 0.90119 1.21546 1.00822 1.04265 0.98837 1.20132 0.88796 0.79009 0.78664 1.91135 1.23708 1.62355 1.63182 1.84993 1.45644 1.58199 1.44235 0.91050 0.84478 0.85762 0.84400 0.80879 0.81481 0.73470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.26 10.90 21.69 0.24 -48.02 15 2 C 0.01 0.30 5.39 85.00 0.46 0.75 15 3 Si 1.00 40.00 29.56 68.60 2.03 42.02 15 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 15 5 H -0.27 -10.55 7.11 99.48 0.71 -9.85 15 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 7 C -0.36 -19.36 7.32 84.09 0.62 -18.75 15 8 H 0.10 5.24 7.63 -2.91 -0.02 5.22 15 9 N -0.22 -12.02 1.90 -342.23 -0.65 -12.67 15 10 C -0.03 -1.65 9.99 83.38 0.83 -0.82 15 11 C -0.26 -13.59 10.81 22.05 0.24 -13.35 15 12 C -0.21 -9.98 10.87 22.73 0.25 -9.73 15 13 C -0.08 -3.92 4.40 38.95 0.17 -3.75 15 14 C 0.06 2.19 9.54 22.49 0.21 2.40 15 15 C -0.23 -8.49 9.60 22.44 0.22 -8.27 15 16 C 0.49 20.95 6.97 68.53 0.48 21.43 15 17 O -0.51 -27.52 13.03 19.09 0.25 -27.27 15 18 O -0.52 -18.48 13.54 -59.31 -0.80 -19.29 15 19 H 0.28 14.46 8.30 -92.71 -0.77 13.69 15 20 H 0.14 8.11 6.45 -2.91 -0.02 8.09 15 21 H 0.12 5.68 8.06 -2.91 -0.02 5.66 15 22 H 0.14 5.57 8.06 -2.91 -0.02 5.54 15 23 H 0.17 4.72 8.06 -2.91 -0.02 4.69 15 24 H 0.17 4.51 8.06 -2.91 -0.02 4.49 15 25 H 0.41 12.13 8.98 -74.05 -0.67 11.46 15 Total: -1.00 -69.77 228.72 5.08 -64.69 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.55 Total: 30.63 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 3.47 Total: -30.09 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.41 Total: -60.70 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -0.55 Total: -46.56 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.02 kcal Total: -69.77 5.08 -64.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383476186.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.071 kcal (2) G-P(sol) polarization free energy of solvation -69.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds