Wall clock time and date at job start Mon Mar 30 2020 02:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30562 * 1 3 3 Si 1.86797 * 120.00012 * 2 1 4 4 H 1.48507 * 109.47155 * 269.99806 * 3 2 1 5 5 H 1.48500 * 109.47320 * 29.99893 * 3 2 1 6 6 H 1.48500 * 109.47338 * 150.00158 * 3 2 1 7 7 C 1.40702 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00222 * 0.02562 * 7 2 1 9 9 N 1.32692 * 119.99784 * 180.02562 * 7 2 1 10 10 C 1.32091 * 119.99998 * 201.70866 * 9 7 2 11 11 C 1.41831 * 120.00029 * 8.74565 * 10 9 7 12 12 C 1.40388 * 120.22716 * 25.87131 * 11 10 9 13 13 C 1.38025 * 119.78215 * 179.72682 * 12 11 10 14 14 O 1.35967 * 119.86781 * 180.25445 * 13 12 11 15 15 C 1.39183 * 120.25760 * 0.50634 * 13 12 11 16 16 C 1.38174 * 120.47899 * 359.49227 * 15 13 12 17 17 C 1.38490 * 120.19999 * 0.25270 * 16 15 13 18 18 O 1.35713 * 120.13172 * 179.97438 * 17 16 15 19 19 H 0.96997 * 119.99555 * 359.97438 * 1 2 3 20 20 H 1.08002 * 120.00396 * 188.74258 * 10 9 7 21 21 H 1.07995 * 120.10815 * 0.02562 * 12 11 10 22 22 H 0.96702 * 113.99985 * 270.25728 * 14 13 12 23 23 H 1.08005 * 119.76159 * 179.76113 * 15 13 12 24 24 H 1.07999 * 119.89989 * 180.22962 * 16 15 13 25 25 H 0.96697 * 114.00088 * 84.87863 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2396 1.6177 0.0000 4 1 2.4872 2.0464 -1.4001 5 1 1.4371 2.6527 0.7000 6 1 3.5372 1.4402 0.7000 7 6 2.0091 -1.2185 0.0005 8 1 1.4691 -2.1538 0.0005 9 7 3.3360 -1.2185 0.0011 10 6 3.9967 -2.2814 -0.4216 11 6 3.3001 -3.3470 -1.0468 12 6 2.0831 -3.1066 -1.7041 13 6 1.4158 -4.1494 -2.3143 14 8 0.2397 -3.9175 -2.9559 15 6 1.9396 -5.4382 -2.2711 16 6 3.1365 -5.6870 -1.6271 17 6 3.8250 -4.6542 -1.0128 18 8 5.0002 -4.9002 -0.3803 19 1 -0.4849 0.8401 0.0004 20 1 5.0672 -2.3391 -0.2911 21 1 1.6729 -2.1081 -1.7363 22 1 -0.5403 -4.0039 -2.3907 23 1 1.4088 -6.2489 -2.7480 24 1 3.5362 -6.6900 -1.6024 25 1 5.7705 -4.8928 -0.9648 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383716941.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:01 Heat of formation + Delta-G solvation = -70.082235 kcal Electronic energy + Delta-G solvation = -13001.834010 eV Core-core repulsion = 10558.864769 eV Total energy + Delta-G solvation = -2442.969240 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.86913 -38.67859 -37.86463 -35.92727 -34.87816 -31.37259 -29.75996 -27.75716 -24.22288 -23.20790 -21.48331 -19.91668 -19.22851 -18.11217 -17.37170 -16.79909 -16.24193 -16.02909 -15.56501 -15.05232 -14.44234 -13.95985 -13.87846 -13.66165 -13.30958 -12.71421 -12.66147 -12.03165 -11.87650 -11.63899 -11.30652 -11.00816 -9.91589 -9.63313 -9.21562 -8.99272 -6.47348 0.14829 0.47553 1.20523 1.31762 1.48703 1.76882 2.21871 2.72063 3.35215 3.42917 3.60154 4.17762 4.31896 4.42374 4.69024 4.76420 5.06417 5.23063 5.32688 5.45923 5.64225 5.67877 5.75412 6.00971 6.14742 6.59877 6.88585 7.09831 7.81048 8.12021 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.034779 B = 0.011768 C = 0.009160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.895402 B = 2378.781617 C = 3056.169704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.048 3.952 3 Si 0.990 3.010 4 H -0.263 1.263 5 H -0.253 1.253 6 H -0.255 1.255 7 C -0.256 4.256 8 H 0.060 0.940 9 N -0.391 5.391 10 C -0.172 4.172 11 C -0.031 4.031 12 C -0.179 4.179 13 C 0.091 3.909 14 O -0.511 6.511 15 C -0.176 4.176 16 C -0.119 4.119 17 C 0.045 3.955 18 O -0.498 6.498 19 H 0.313 0.687 20 H 0.127 0.873 21 H 0.121 0.879 22 H 0.401 0.599 23 H 0.148 0.852 24 H 0.153 0.847 25 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.652 -4.473 -3.288 5.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.176 4.176 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.177 1.177 6 H -0.178 1.178 7 C -0.413 4.413 8 H 0.077 0.923 9 N -0.101 5.101 10 C -0.343 4.343 11 C -0.033 4.033 12 C -0.200 4.200 13 C 0.047 3.953 14 O -0.323 6.323 15 C -0.195 4.195 16 C -0.137 4.137 17 C -0.002 4.002 18 O -0.309 6.309 19 H 0.125 0.875 20 H 0.145 0.855 21 H 0.138 0.862 22 H 0.258 0.742 23 H 0.165 0.835 24 H 0.171 0.829 25 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.717 -3.558 -2.935 4.922 hybrid contribution -0.413 -0.222 -0.160 0.496 sum 1.304 -3.780 -3.096 5.057 Atomic orbital electron populations 1.69357 1.09115 1.33563 1.29197 1.27113 0.95680 1.04682 0.90098 0.84920 0.79781 0.74278 0.80092 1.18778 1.17718 1.17837 1.20855 0.89283 0.94689 1.36479 0.92283 1.67007 1.09666 1.27803 1.05650 1.21853 0.97380 0.96449 1.18598 1.19068 0.94601 0.94093 0.95560 1.21994 0.98268 1.00034 0.99662 1.18511 0.88723 0.92730 0.95368 1.84693 1.14982 1.93148 1.39509 1.21260 0.98392 0.95662 1.04233 1.21311 0.95683 0.99357 0.97344 1.18818 0.90390 0.90972 0.99970 1.84705 1.15304 1.92895 1.38029 0.87484 0.85544 0.86173 0.74205 0.83478 0.82932 0.74713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.70 13.92 21.97 0.31 -38.40 15 2 C 0.05 2.40 5.53 85.48 0.47 2.87 15 3 Si 0.99 40.69 28.56 68.60 1.96 42.65 15 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 15 5 H -0.25 -9.13 7.11 99.48 0.71 -8.42 15 6 H -0.25 -11.09 7.11 99.48 0.71 -10.39 15 7 C -0.26 -14.15 7.28 85.17 0.62 -13.53 15 8 H 0.06 3.55 5.57 -2.91 -0.02 3.53 15 9 N -0.39 -21.36 8.85 -190.19 -1.68 -23.04 15 10 C -0.17 -8.85 10.58 85.54 0.91 -7.94 15 11 C -0.03 -1.48 5.36 -21.22 -0.11 -1.59 15 12 C -0.18 -8.75 7.44 22.74 0.17 -8.58 15 13 C 0.09 3.79 6.69 22.45 0.15 3.94 15 14 O -0.51 -19.32 13.50 -93.18 -1.26 -20.58 15 15 C -0.18 -6.21 9.97 22.48 0.22 -5.98 15 16 C -0.12 -4.10 9.96 22.31 0.22 -3.87 15 17 C 0.05 1.84 6.73 22.98 0.15 1.99 15 18 O -0.50 -17.78 12.79 -90.34 -1.16 -18.94 15 19 H 0.31 13.36 8.29 -92.71 -0.77 12.59 15 20 H 0.13 6.01 7.82 -2.91 -0.02 5.99 15 21 H 0.12 6.60 5.35 -2.91 -0.02 6.58 15 22 H 0.40 11.66 9.06 -74.06 -0.67 10.99 15 23 H 0.15 4.17 8.06 -2.91 -0.02 4.14 15 24 H 0.15 4.09 8.06 -2.91 -0.02 4.07 15 25 H 0.40 9.75 9.06 -74.06 -0.67 9.08 15 Total: -1.00 -63.61 229.76 0.88 -62.72 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.09 Total: 28.29 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 2.81 Total: -32.70 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -1.38 Total: -61.44 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -2.41 Total: -39.52 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 1.96 Total: 42.65 kcal Total: -63.61 0.88 -62.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383716941.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.360 kcal (2) G-P(sol) polarization free energy of solvation -63.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds