Wall clock time and date at job start Mon Mar 30 2020 02:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39227 * 120.53330 * 246.07302 * 3 2 1 5 5 C 1.38799 * 120.04854 * 180.28588 * 4 3 2 6 6 O 1.35696 * 119.40715 * 179.72565 * 5 4 3 7 7 C 1.39221 * 121.18972 * 359.74668 * 5 4 3 8 8 C 1.37485 * 121.10429 * 359.95819 * 7 5 4 9 9 F 1.35101 * 120.07142 * 180.02562 * 8 7 5 10 10 C 1.41263 * 119.85473 * 0.02562 * 8 7 5 11 11 C 1.40485 * 120.56634 * 180.02562 * 10 8 7 12 12 H 1.07995 * 120.00457 * 143.92957 * 11 10 8 13 13 C 1.40237 * 119.99842 * 323.93430 * 11 10 8 14 14 N 1.30702 * 120.00001 * 320.74875 * 13 11 10 15 15 Si 1.86800 * 119.99834 * 140.47029 * 13 11 10 16 16 H 1.48506 * 109.46697 * 180.27838 * 15 13 11 17 17 H 1.48502 * 109.46887 * 300.27270 * 15 13 11 18 18 H 1.48492 * 109.47107 * 60.27584 * 15 13 11 19 19 H 1.08000 * 119.98121 * 0.03241 * 4 3 2 20 20 H 0.96693 * 113.99978 * 270.02017 * 6 5 4 21 21 H 1.08001 * 119.44838 * 179.97438 * 7 5 4 22 22 H 0.96998 * 119.99784 * 353.91931 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2751 0.4873 1.0961 5 6 4.6630 0.4887 1.0830 6 8 5.3390 0.9712 2.1561 7 6 5.3741 0.0043 -0.0115 8 6 4.7249 -0.4929 -1.1167 9 9 5.4358 -0.9582 -2.1671 10 6 3.3129 -0.5162 -1.1516 11 6 2.6341 -1.0214 -2.2730 12 1 1.7141 -1.5722 -2.1446 13 6 3.1514 -0.8106 -3.5594 14 7 3.6960 0.3376 -3.8646 15 14 3.0689 -2.1736 -4.8341 16 1 3.6851 -1.7042 -6.1011 17 1 3.8062 -3.3625 -4.3359 18 1 1.6502 -2.5375 -5.0786 19 1 2.7433 0.8679 1.9557 20 1 5.5305 1.9177 2.1071 21 1 6.4538 0.0190 0.0081 22 1 3.6641 1.0728 -3.2327 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575644844.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:17 Heat of formation + Delta-G solvation = -73.040131 kcal Electronic energy + Delta-G solvation = -12711.885988 eV Core-core repulsion = 10145.328179 eV Total energy + Delta-G solvation = -2566.557809 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.35407 -39.98833 -37.93530 -36.80457 -35.46357 -31.66018 -31.02827 -26.92701 -24.51709 -23.12422 -20.31447 -20.11353 -17.79022 -17.39270 -16.81052 -16.64025 -16.22975 -15.75302 -15.25530 -14.66713 -14.54200 -14.36152 -13.95901 -13.81237 -13.10840 -13.01106 -12.47392 -12.15725 -11.96559 -11.80105 -11.45338 -10.84648 -9.75899 -9.60696 -9.36590 -6.69639 0.03258 0.58766 1.45431 1.52776 1.76445 1.86041 2.03858 2.20261 2.47117 3.08254 3.20818 3.69877 3.96567 4.23106 4.30276 4.70799 5.05862 5.18178 5.40643 5.49151 5.57646 5.71221 5.92550 6.33864 6.43647 6.76728 7.14983 7.69459 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.013822 C = 0.010271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.926225 B = 2025.283863 C = 2725.546958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.305 3.695 3 C -0.167 4.167 4 C -0.037 4.037 5 C -0.011 4.011 6 O -0.497 6.497 7 C -0.102 4.102 8 C -0.021 4.021 9 F -0.153 7.153 10 C 0.081 3.919 11 C -0.521 4.521 12 H 0.082 0.918 13 C 0.026 3.974 14 N -0.750 5.750 15 Si 1.099 2.901 16 H -0.263 1.263 17 H -0.261 1.261 18 H -0.258 1.258 19 H 0.139 0.861 20 H 0.392 0.608 21 H 0.137 0.863 22 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 0.461 2.298 5.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.005 4.005 3 C -0.173 4.173 4 C -0.058 4.058 5 C -0.056 4.056 6 O -0.307 6.307 7 C -0.122 4.122 8 C -0.041 4.041 9 F -0.132 7.132 10 C 0.075 3.925 11 C -0.546 4.546 12 H 0.100 0.900 13 C -0.199 4.199 14 N -0.368 5.368 15 Si 0.915 3.085 16 H -0.187 1.187 17 H -0.185 1.185 18 H -0.182 1.182 19 H 0.157 0.843 20 H 0.248 0.752 21 H 0.154 0.846 22 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.247 -0.429 0.931 3.405 hybrid contribution 0.091 0.951 1.255 1.577 sum 3.338 0.522 2.186 4.024 Atomic orbital electron populations 1.81034 1.12875 1.14051 1.10951 1.25606 0.92544 0.91240 0.91068 1.16552 0.83361 1.17388 1.00030 1.21130 0.93403 0.95626 0.95622 1.17163 0.88601 1.10449 0.89409 1.84792 1.76315 1.30002 1.39557 1.21108 1.00636 0.98689 0.91745 1.17484 0.88955 1.10759 0.86936 1.91346 1.77856 1.87452 1.56518 1.18597 0.90170 0.90706 0.92981 1.20641 1.10054 1.30788 0.93158 0.90019 1.28359 0.89179 1.00946 1.01465 1.70539 1.25923 1.02103 1.38193 0.83248 0.79094 0.72765 0.73412 1.18653 1.18521 1.18189 0.84316 0.75233 0.84556 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.86 18.54 19.00 0.35 -23.51 14 2 C 0.31 13.86 14.46 88.33 1.28 15.14 14 3 C -0.17 -7.34 5.94 -19.62 -0.12 -7.45 14 4 C -0.04 -1.37 9.68 22.64 0.22 -1.15 14 5 C -0.01 -0.39 6.69 22.64 0.15 -0.24 14 6 O -0.50 -14.69 13.46 -90.16 -1.21 -15.90 14 7 C -0.10 -3.94 9.86 22.33 0.22 -3.72 14 8 C -0.02 -0.97 6.82 22.84 0.16 -0.81 14 9 F -0.15 -7.26 15.03 44.97 0.68 -6.59 14 10 C 0.08 3.88 5.20 -19.82 -0.10 3.78 14 11 C -0.52 -25.85 8.09 23.30 0.19 -25.67 14 12 H 0.08 4.15 7.81 -2.91 -0.02 4.12 14 13 C 0.03 1.23 3.80 85.35 0.32 1.56 14 14 N -0.75 -36.71 12.68 21.88 0.28 -36.43 14 15 Si 1.10 40.71 30.06 68.60 2.06 42.77 14 16 H -0.26 -9.40 7.11 99.48 0.71 -8.69 14 17 H -0.26 -9.37 7.11 99.48 0.71 -8.66 14 18 H -0.26 -8.88 7.11 99.48 0.71 -8.17 14 19 H 0.14 4.42 8.06 -2.91 -0.02 4.40 14 20 H 0.39 7.58 9.06 -74.06 -0.67 6.91 14 21 H 0.14 4.64 8.06 -2.91 -0.02 4.62 14 22 H 0.29 14.46 8.16 -92.71 -0.76 13.70 14 Total: -1.00 -55.10 222.78 5.10 -50.00 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.62 Total: 8.23 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 2.32 Total: -18.57 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: 0.63 Total: -59.95 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -1.21 Total: -15.90 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 0.68 Total: -6.59 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.06 Total: 42.77 kcal Total: -55.10 5.10 -50.00 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575644844.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.040 kcal (2) G-P(sol) polarization free energy of solvation -55.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds