Wall clock time and date at job start Mon Mar 30 2020 02:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.40061 * 119.97740 * 355.04191 * 3 2 1 5 5 C 1.38558 * 120.33418 * 180.25717 * 4 3 2 6 6 O 1.35977 * 119.85687 * 179.76514 * 5 4 3 7 7 C 1.38600 * 120.28296 * 359.48562 * 5 4 3 8 8 F 1.35097 * 120.02712 * 180.27778 * 7 5 4 9 9 C 1.40926 * 119.93943 * 0.25360 * 7 5 4 10 10 C 1.41370 * 120.15914 * 179.97438 * 9 7 5 11 11 H 1.07992 * 120.00391 * 334.57207 * 10 9 7 12 12 C 1.39911 * 119.99135 * 154.57019 * 10 9 7 13 13 N 1.30856 * 120.00512 * 343.03371 * 12 10 9 14 14 Si 1.86805 * 119.99645 * 163.04388 * 12 10 9 15 15 H 1.48498 * 109.47421 * 89.99516 * 14 12 10 16 16 H 1.48501 * 109.46759 * 209.99870 * 14 12 10 17 17 H 1.48501 * 109.46832 * 329.99284 * 14 12 10 18 18 C 1.39018 * 119.96935 * 174.78075 * 3 2 1 19 19 H 1.08002 * 119.83073 * 0.02562 * 4 3 2 20 20 H 0.96702 * 113.99720 * 269.72524 * 6 5 4 21 21 H 0.96998 * 120.00158 * 179.97438 * 13 12 10 22 22 H 1.08001 * 120.14453 * 0.03485 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 -1.2077 0.1049 5 6 4.6539 -1.2153 0.1110 6 8 5.3240 -2.3936 0.2180 7 6 5.3598 -0.0274 0.0026 8 9 6.7107 -0.0413 0.0034 9 6 4.6670 1.1947 -0.1090 10 6 5.3823 2.4091 -0.2192 11 1 6.3839 2.4839 0.1776 12 6 4.7925 3.5141 -0.8426 13 7 3.7423 3.3514 -1.6061 14 14 5.5044 5.2219 -0.5851 15 1 6.5276 5.4939 -1.6264 16 1 4.4188 6.2305 -0.6824 17 1 6.1326 5.2989 0.7583 18 6 3.2619 1.2003 -0.1096 19 1 2.7256 -2.1380 0.1851 20 1 5.5181 -2.6543 1.1288 21 1 3.3332 4.1175 -2.0380 22 1 2.7234 2.1326 -0.1942 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646046.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:06 Heat of formation + Delta-G solvation = -68.279637 kcal Electronic energy + Delta-G solvation = -12547.562675 eV Core-core repulsion = 9981.211296 eV Total energy + Delta-G solvation = -2566.351379 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.26398 -40.08277 -38.10418 -37.20000 -35.33387 -31.96943 -30.37661 -27.49447 -24.19199 -23.38114 -20.65923 -18.43259 -18.17196 -17.92793 -17.46076 -16.53644 -16.19006 -15.29865 -14.82236 -14.71446 -14.64566 -14.33044 -13.90586 -13.57860 -13.49092 -12.88482 -12.53327 -12.31458 -12.12040 -12.03076 -11.32804 -11.11460 -9.60545 -9.29620 -8.80662 -6.53088 0.04448 0.64654 1.40530 1.43763 1.56473 1.67888 1.97192 2.18454 2.66476 2.97767 3.34490 3.52740 3.88857 4.45497 4.59337 4.92375 5.07077 5.19927 5.46209 5.62572 5.75232 5.80992 6.29018 6.51095 6.58040 6.67517 7.01079 8.15849 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.013330 C = 0.009159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.653316 B = 2099.970522 C = 3056.522033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.293 3.707 3 C -0.013 4.013 4 C -0.188 4.188 5 C 0.111 3.889 6 O -0.501 6.501 7 C -0.054 4.054 8 F -0.157 7.157 9 C 0.068 3.932 10 C -0.474 4.474 11 H 0.085 0.915 12 C 0.041 3.959 13 N -0.810 5.810 14 Si 0.985 3.015 15 H -0.263 1.263 16 H -0.263 1.263 17 H -0.255 1.255 18 C -0.106 4.106 19 H 0.144 0.856 20 H 0.405 0.595 21 H 0.297 0.703 22 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -1.182 3.458 4.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.020 4.020 3 C -0.017 4.017 4 C -0.210 4.210 5 C 0.065 3.935 6 O -0.313 6.313 7 C -0.075 4.075 8 F -0.136 7.136 9 C 0.065 3.935 10 C -0.502 4.502 11 H 0.103 0.897 12 C -0.177 4.177 13 N -0.435 5.435 14 Si 0.805 3.195 15 H -0.187 1.187 16 H -0.188 1.188 17 H -0.179 1.179 18 C -0.129 4.129 19 H 0.162 0.838 20 H 0.263 0.737 21 H 0.109 0.891 22 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.500 -1.071 2.686 2.934 hybrid contribution 0.980 0.649 0.357 1.228 sum 1.479 -0.422 3.043 3.410 Atomic orbital electron populations 1.81103 1.12613 1.09605 1.11482 1.25873 0.92681 0.91661 0.91812 1.15717 0.83274 0.94903 1.07796 1.20570 0.91723 0.96671 1.12043 1.17820 0.89826 0.83311 1.02500 1.84752 1.76855 1.35652 1.34059 1.18557 0.76497 0.94088 1.18368 1.91270 1.29894 1.97339 1.95065 1.17615 0.92284 0.91730 0.91901 1.19767 1.02259 0.95187 1.32979 0.89729 1.26756 0.94338 1.05135 0.91438 1.69782 1.18702 1.35341 1.19650 0.85127 0.78967 0.75144 0.80226 1.18743 1.18758 1.17891 1.21230 0.93128 0.96164 1.02361 0.83833 0.73700 0.89149 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.23 18.54 19.00 0.35 -18.87 14 2 C 0.29 11.66 15.31 88.33 1.35 13.01 14 3 C -0.01 -0.53 5.72 -21.40 -0.12 -0.65 14 4 C -0.19 -7.04 9.68 22.79 0.22 -6.82 14 5 C 0.11 4.40 6.69 22.43 0.15 4.55 14 6 O -0.50 -16.89 13.35 -93.29 -1.25 -18.14 14 7 C -0.05 -2.46 7.31 23.01 0.17 -2.29 14 8 F -0.16 -7.32 16.54 44.97 0.74 -6.57 14 9 C 0.07 3.32 5.57 -21.30 -0.12 3.20 14 10 C -0.47 -23.25 8.77 23.45 0.21 -23.05 14 11 H 0.08 4.10 7.73 -2.91 -0.02 4.08 14 12 C 0.04 1.86 5.15 85.24 0.44 2.30 14 13 N -0.81 -38.14 10.97 21.82 0.24 -37.90 14 14 Si 0.99 34.59 29.59 68.60 2.03 36.62 14 15 H -0.26 -9.04 7.11 99.48 0.71 -8.34 14 16 H -0.26 -8.77 7.11 99.48 0.71 -8.06 14 17 H -0.26 -8.81 7.11 99.48 0.71 -8.10 14 18 C -0.11 -4.89 8.38 23.01 0.19 -4.70 14 19 H 0.14 4.55 8.06 -2.91 -0.02 4.53 14 20 H 0.41 9.09 9.06 -74.06 -0.67 8.42 14 21 H 0.30 12.59 8.30 -92.71 -0.77 11.82 14 22 H 0.13 6.03 6.19 -2.91 -0.02 6.01 14 Total: -1.00 -54.18 222.22 5.22 -48.96 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.62 Total: 10.36 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 2.49 Total: -14.45 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.59 Total: -56.77 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -1.25 Total: -18.14 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 0.74 Total: -6.57 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Total: -54.18 5.22 -48.96 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646046.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.324 kcal (2) G-P(sol) polarization free energy of solvation -54.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds