Wall clock time and date at job start Mon Mar 30 2020 02:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39372 * 120.58490 * 305.28914 * 3 2 1 5 5 C 1.38607 * 119.88297 * 180.28192 * 4 3 2 6 6 O 1.35730 * 119.44032 * 179.75805 * 5 4 3 7 7 C 1.39623 * 121.12169 * 359.73026 * 5 4 3 8 8 F 1.35099 * 119.39060 * 179.97438 * 7 5 4 9 9 C 1.36378 * 121.22083 * 0.02562 * 7 5 4 10 10 C 1.40907 * 120.02340 * 359.97438 * 9 7 5 11 11 C 1.40600 * 120.54515 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00282 * 155.26387 * 11 10 9 13 13 C 1.40201 * 119.99799 * 335.52898 * 11 10 9 14 14 N 1.30701 * 120.00051 * 342.24192 * 13 11 10 15 15 Si 1.86797 * 119.99878 * 162.23016 * 13 11 10 16 16 H 1.48501 * 109.46797 * 90.00595 * 15 13 11 17 17 H 1.48499 * 109.47397 * 210.00209 * 15 13 11 18 18 H 1.48493 * 109.47329 * 330.00708 * 15 13 11 19 19 H 1.08001 * 120.05694 * 0.03104 * 4 3 2 20 20 H 0.96699 * 113.99480 * 269.97472 * 6 5 4 21 21 H 1.08003 * 119.99457 * 179.97438 * 9 7 5 22 22 H 0.97000 * 119.99886 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2774 -0.6922 0.9794 5 6 4.6634 -0.6769 0.9689 6 8 5.3452 -1.3507 1.9299 7 6 5.3700 0.0193 -0.0136 8 9 6.7208 0.0110 0.0099 9 6 4.7220 0.7083 -0.9961 10 6 3.3135 0.7263 -1.0330 11 6 2.6341 1.4335 -2.0405 12 1 1.6313 1.1459 -2.3198 13 6 3.2606 2.5086 -2.6865 14 7 4.3054 3.0773 -2.1451 15 14 2.6021 3.1281 -4.3211 16 1 1.5899 4.1870 -4.0777 17 1 3.7188 3.6863 -5.1252 18 1 1.9740 2.0035 -5.0600 19 1 2.7482 -1.2366 1.7474 20 1 5.5390 -0.8238 2.7172 21 1 5.2884 1.2403 -1.7461 22 1 4.7391 3.8209 -2.5922 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646529.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:52 Heat of formation + Delta-G solvation = -70.549581 kcal Electronic energy + Delta-G solvation = -12535.126252 eV Core-core repulsion = 9968.676441 eV Total energy + Delta-G solvation = -2566.449811 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.64716 -39.85232 -37.90966 -36.87065 -35.33856 -31.46756 -31.18227 -27.27153 -24.15766 -23.28181 -20.04375 -19.70904 -18.06785 -17.83696 -17.03162 -16.53694 -16.26863 -15.31125 -14.81003 -14.65858 -14.53285 -14.45577 -13.69616 -13.65653 -13.47594 -12.93191 -12.57149 -12.39204 -12.05282 -11.90069 -11.30943 -11.14723 -9.66816 -9.33465 -8.94750 -6.67856 0.15735 0.69511 1.36580 1.43498 1.52534 1.98137 2.08739 2.13868 2.56895 3.29640 3.41995 3.65315 3.85221 4.21191 4.71546 4.82539 5.00151 5.26895 5.32356 5.56593 5.63522 5.91100 6.21341 6.45982 6.50175 6.89452 7.14116 7.95061 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.012937 C = 0.009225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.988831 B = 2163.830300 C = 3034.464281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.309 3.691 3 C -0.199 4.199 4 C -0.008 4.008 5 C -0.076 4.076 6 O -0.495 6.495 7 C 0.115 3.885 8 F -0.155 7.155 9 C -0.206 4.206 10 C 0.141 3.859 11 C -0.438 4.438 12 H 0.085 0.915 13 C 0.042 3.958 14 N -0.775 5.775 15 Si 0.984 3.016 16 H -0.261 1.261 17 H -0.254 1.254 18 H -0.257 1.257 19 H 0.143 0.857 20 H 0.385 0.615 21 H 0.131 0.869 22 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.010 0.363 0.068 3.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.001 4.001 3 C -0.205 4.205 4 C -0.029 4.029 5 C -0.122 4.122 6 O -0.304 6.304 7 C 0.095 3.905 8 F -0.134 7.134 9 C -0.227 4.227 10 C 0.136 3.864 11 C -0.464 4.464 12 H 0.103 0.897 13 C -0.181 4.181 14 N -0.397 5.397 15 Si 0.803 3.197 16 H -0.185 1.185 17 H -0.177 1.177 18 H -0.181 1.181 19 H 0.160 0.840 20 H 0.239 0.761 21 H 0.148 0.852 22 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.466 0.093 -0.335 1.507 hybrid contribution 0.619 0.770 -0.178 1.004 sum 2.086 0.864 -0.513 2.315 Atomic orbital electron populations 1.81035 1.12863 1.13912 1.11776 1.25603 0.92464 0.90843 0.91150 1.16814 0.83453 1.16777 1.03454 1.20837 0.91893 0.94161 0.96012 1.17505 0.89542 1.08907 0.96262 1.84830 1.76064 1.40292 1.29238 1.17992 0.75848 0.98619 0.98075 1.91363 1.30360 1.95248 1.96410 1.20811 0.94617 1.05635 1.01587 1.18398 0.90672 0.88313 0.89055 1.19977 1.01819 1.10555 1.14082 0.89658 1.26934 0.93932 0.95138 1.02104 1.69714 1.15984 1.16442 1.37517 0.85136 0.79458 0.79261 0.75845 1.18527 1.17746 1.18082 0.83976 0.76065 0.85183 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.69 18.54 19.00 0.35 -23.33 14 2 C 0.31 13.80 14.30 88.33 1.26 15.06 14 3 C -0.20 -8.75 5.94 -19.57 -0.12 -8.87 14 4 C -0.01 -0.31 9.69 22.63 0.22 -0.09 14 5 C -0.08 -3.05 6.70 22.69 0.15 -2.90 14 6 O -0.50 -17.30 13.29 -90.53 -1.20 -18.51 14 7 C 0.12 5.04 7.22 22.17 0.16 5.20 14 8 F -0.15 -6.62 17.04 44.97 0.77 -5.85 14 9 C -0.21 -9.59 8.60 22.49 0.19 -9.40 14 10 C 0.14 6.70 5.74 -19.86 -0.11 6.59 14 11 C -0.44 -20.65 8.56 23.32 0.20 -20.45 14 12 H 0.09 4.04 7.39 -2.91 -0.02 4.01 14 13 C 0.04 1.80 5.15 85.34 0.44 2.23 14 14 N -0.77 -34.12 10.96 21.87 0.24 -33.88 14 15 Si 0.98 32.84 29.60 68.60 2.03 34.87 14 16 H -0.26 -8.60 7.11 99.48 0.71 -7.89 14 17 H -0.25 -7.81 7.11 99.48 0.71 -7.11 14 18 H -0.26 -8.67 7.11 99.48 0.71 -7.97 14 19 H 0.14 4.73 8.06 -2.91 -0.02 4.71 14 20 H 0.38 9.66 9.06 -74.06 -0.67 8.99 14 21 H 0.13 6.21 6.17 -2.91 -0.02 6.20 14 22 H 0.31 11.85 8.29 -92.71 -0.77 11.08 14 Total: -1.00 -52.50 221.62 5.20 -47.30 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.62 Total: 12.02 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 2.40 Total: -12.63 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.59 Total: -57.21 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -1.20 Total: -18.51 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.77 Total: -5.85 kcal Atomic # 14 Polarization: 32.84 SS G_CDS: 2.03 Total: 34.87 kcal Total: -52.50 5.20 -47.30 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646529.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.248 kcal (2) G-P(sol) polarization free energy of solvation -52.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds