Wall clock time and date at job start Mon Mar 30 2020 02:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39850 * 120.06656 * 304.49241 * 3 2 1 5 5 C 1.38590 * 120.41010 * 179.97438 * 4 3 2 6 6 F 1.35100 * 119.72645 * 179.97438 * 5 4 3 7 7 C 1.37913 * 120.55799 * 359.97438 * 5 4 3 8 8 C 1.40650 * 120.11836 * 0.02562 * 7 5 4 9 9 C 1.41153 * 120.20082 * 179.97438 * 8 7 5 10 10 H 1.08010 * 119.99649 * 154.29238 * 9 8 7 11 11 C 1.39937 * 120.00456 * 334.29359 * 9 8 7 12 12 N 1.30861 * 119.99411 * 343.33653 * 11 9 8 13 13 Si 1.86795 * 120.00058 * 163.33379 * 11 9 8 14 14 H 1.48501 * 109.47370 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46832 * 119.99991 * 13 11 9 16 16 H 1.48493 * 109.47371 * 240.00117 * 13 11 9 17 17 C 1.39851 * 120.06975 * 124.21410 * 3 2 1 18 18 O 1.35437 * 120.26768 * 0.02650 * 17 3 2 19 19 H 1.07994 * 119.79600 * 359.95537 * 4 3 2 20 20 H 1.07999 * 119.94214 * 179.97438 * 7 5 4 21 21 H 0.97003 * 119.99408 * 179.97438 * 12 11 9 22 22 H 0.96707 * 114.00117 * 90.00166 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.6844 0.9975 5 6 4.6549 -0.6890 1.0041 6 9 5.3180 -1.3549 1.9746 7 6 5.3628 -0.0194 0.0282 8 6 4.6811 0.6770 -0.9859 9 6 5.4039 1.3634 -1.9854 10 1 4.9565 1.5358 -2.9532 11 6 6.7001 1.8204 -1.7223 12 7 7.1237 1.9114 -0.4875 13 14 7.8257 2.3004 -3.1337 14 1 7.1133 2.1079 -4.4224 15 1 8.2160 3.7262 -2.9926 16 1 9.0422 1.4492 -3.1082 17 6 3.2685 0.6815 -1.0008 18 8 2.5979 1.3434 -1.9738 19 1 2.7270 -1.2130 1.7677 20 1 6.4427 -0.0292 0.0431 21 1 8.0224 2.2278 -0.3052 22 1 2.4032 2.2661 -1.7594 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646581.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:09 Heat of formation + Delta-G solvation = -66.265782 kcal Electronic energy + Delta-G solvation = -12543.887874 eV Core-core repulsion = 9977.623822 eV Total energy + Delta-G solvation = -2566.264052 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.58761 -40.29124 -37.50671 -37.07215 -35.58008 -32.03790 -30.33264 -27.38876 -24.62694 -22.84809 -20.57778 -18.97817 -18.30290 -17.49978 -17.06710 -16.41581 -16.31524 -16.00499 -14.81308 -14.69949 -14.54737 -14.19561 -14.04719 -13.47256 -13.36011 -13.00665 -12.52067 -12.39204 -12.08869 -11.93200 -11.16333 -11.10050 -9.68079 -9.23316 -8.76070 -6.49985 0.05428 0.59494 1.43368 1.47142 1.59683 1.66060 2.05537 2.20831 2.63982 2.94506 3.30720 3.68888 3.84915 4.39426 4.66972 4.83986 5.14650 5.15216 5.38530 5.57712 5.74348 6.02088 6.37517 6.47597 6.60975 6.72544 7.14862 8.18276 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.033642 B = 0.011807 C = 0.008968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.098398 B = 2370.906322 C = 3121.531349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.295 3.705 3 C -0.011 4.011 4 C -0.214 4.214 5 C 0.104 3.896 6 F -0.155 7.155 7 C -0.187 4.187 8 C 0.085 3.915 9 C -0.458 4.458 10 H 0.092 0.908 11 C 0.039 3.961 12 N -0.805 5.805 13 Si 0.985 3.015 14 H -0.258 1.258 15 H -0.265 1.265 16 H -0.265 1.265 17 C 0.029 3.971 18 O -0.493 6.493 19 H 0.139 0.861 20 H 0.125 0.875 21 H 0.297 0.703 22 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.875 0.616 -0.740 2.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.019 4.019 3 C -0.016 4.016 4 C -0.236 4.236 5 C 0.084 3.916 6 F -0.134 7.134 7 C -0.208 4.208 8 C 0.081 3.919 9 C -0.486 4.486 10 H 0.110 0.890 11 C -0.179 4.179 12 N -0.429 5.429 13 Si 0.805 3.195 14 H -0.181 1.181 15 H -0.190 1.190 16 H -0.189 1.189 17 C -0.019 4.019 18 O -0.303 6.303 19 H 0.157 0.843 20 H 0.143 0.857 21 H 0.108 0.892 22 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 0.362 0.144 -0.848 0.934 hybrid contribution 1.074 0.572 0.112 1.222 sum 1.436 0.716 -0.736 1.765 Atomic orbital electron populations 1.81100 1.12456 1.10423 1.10230 1.25649 0.92453 0.92139 0.91627 1.15829 0.83334 1.04760 0.97634 1.20241 0.91544 1.09474 1.02343 1.17362 0.89926 0.96250 0.88038 1.91382 1.81312 1.79007 1.61688 1.21307 1.00607 1.01079 0.97830 1.17751 0.90104 0.91364 0.92685 1.19806 0.98630 1.30362 0.99760 0.89004 1.26810 0.99303 0.92813 0.99017 1.69818 1.19509 1.31739 1.21865 0.85085 0.77542 0.78644 0.78186 1.18096 1.18966 1.18928 1.18511 0.89595 1.02347 0.91496 1.84613 1.76098 1.28488 1.41134 0.84286 0.85707 0.89231 0.75685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.51 18.54 19.00 0.35 -18.16 14 2 C 0.30 11.47 14.86 88.33 1.31 12.79 14 3 C -0.01 -0.45 5.74 -21.25 -0.12 -0.58 14 4 C -0.21 -8.36 9.72 22.74 0.22 -8.14 14 5 C 0.10 4.42 7.27 22.28 0.16 4.58 14 6 F -0.15 -6.35 17.25 44.97 0.78 -5.57 14 7 C -0.19 -8.71 8.64 22.78 0.20 -8.51 14 8 C 0.08 3.97 5.57 -21.23 -0.12 3.85 14 9 C -0.46 -21.31 8.71 23.40 0.20 -21.11 14 10 H 0.09 4.20 7.66 -2.91 -0.02 4.18 14 11 C 0.04 1.69 5.15 85.25 0.44 2.13 14 12 N -0.81 -36.56 10.96 21.83 0.24 -36.33 14 13 Si 0.98 33.41 29.59 68.60 2.03 35.44 14 14 H -0.26 -8.70 7.11 99.48 0.71 -8.00 14 15 H -0.26 -8.65 7.11 99.48 0.71 -7.94 14 16 H -0.26 -8.75 7.11 99.48 0.71 -8.04 14 17 C 0.03 1.27 6.74 23.41 0.16 1.43 14 18 O -0.49 -19.55 12.22 -87.33 -1.07 -20.61 14 19 H 0.14 4.73 8.06 -2.91 -0.02 4.71 14 20 H 0.13 6.08 6.18 -2.91 -0.02 6.06 14 21 H 0.30 12.08 8.30 -92.71 -0.77 11.31 14 22 H 0.39 12.17 9.06 -74.05 -0.67 11.50 14 Total: -1.00 -50.42 221.53 5.40 -45.02 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.62 Total: 13.78 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 2.45 Total: -13.57 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.59 Total: -54.49 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -1.07 Total: -20.61 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.78 Total: -5.57 kcal Atomic # 14 Polarization: 33.41 SS G_CDS: 2.03 Total: 35.44 kcal Total: -50.42 5.40 -45.02 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646581.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.250 kcal (2) G-P(sol) polarization free energy of solvation -50.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds