Wall clock time and date at job start Mon Mar 30 2020 02:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39104 * 120.02871 * 90.91504 * 3 2 1 5 5 C 1.40481 * 119.72326 * 179.71940 * 4 3 2 6 6 C 1.41361 * 120.11306 * 180.27159 * 5 4 3 7 7 H 1.08002 * 120.00048 * 204.79637 * 6 5 4 8 8 C 1.39890 * 120.00129 * 24.79956 * 6 5 4 9 9 N 1.30859 * 119.99539 * 17.78062 * 8 6 5 10 10 Si 1.86800 * 119.99899 * 197.77793 * 8 6 5 11 11 H 1.48505 * 109.47052 * 60.00250 * 10 8 6 12 12 H 1.48497 * 109.46717 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47284 * 299.99945 * 10 8 6 14 14 C 1.40815 * 119.77167 * 0.57460 * 5 4 3 15 15 C 1.37958 * 120.05399 * 359.69658 * 14 5 4 16 16 O 1.35958 * 119.85662 * 179.97438 * 15 14 5 17 17 C 1.39264 * 120.27963 * 0.02562 * 15 14 5 18 18 F 1.35101 * 119.88302 * 179.97438 * 17 15 14 19 19 H 1.08003 * 120.13618 * 359.97438 * 4 3 2 20 20 H 0.97002 * 119.99523 * 180.02562 * 9 8 6 21 21 H 1.08007 * 119.97212 * 179.72643 * 14 5 4 22 22 H 0.96697 * 114.00279 * 270.02101 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2642 0.0202 -1.2042 5 6 4.6689 0.0267 -1.1966 6 6 5.3846 0.0523 -2.4154 7 1 6.3921 -0.3345 -2.4582 8 6 4.7880 0.5787 -3.5659 9 7 3.7360 1.3502 -3.4629 10 14 5.4931 0.1805 -5.2493 11 1 5.4569 -1.2882 -5.4663 12 1 4.6849 0.8552 -6.2966 13 1 6.8974 0.6573 -5.3232 14 6 5.3617 0.0011 0.0291 15 6 4.6620 -0.0239 1.2178 16 8 5.3349 -0.0491 2.3989 17 6 3.2693 -0.0245 1.2130 18 9 2.5922 -0.0496 2.3818 19 1 2.7268 0.0345 -2.1409 20 1 3.3221 1.7149 -4.2607 21 1 6.4417 0.0015 0.0386 22 1 5.5296 -0.9395 2.7218 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575647713.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:23 Heat of formation + Delta-G solvation = -51.797584 kcal Electronic energy + Delta-G solvation = -12502.172194 eV Core-core repulsion = 9936.535531 eV Total energy + Delta-G solvation = -2565.636664 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.76694 -38.40775 -36.52410 -35.52703 -33.57901 -30.36653 -28.74371 -25.47218 -22.91741 -21.43910 -19.02287 -16.84924 -16.67599 -16.20009 -15.74029 -15.00644 -14.64378 -13.80245 -13.37067 -12.89361 -12.75487 -12.60335 -12.36265 -11.96809 -11.78619 -11.38370 -11.02596 -10.68751 -10.42865 -10.37512 -9.79981 -9.39184 -7.94679 -7.62453 -7.14156 -4.73292 1.76473 2.26699 2.88125 2.92604 2.94784 3.35248 3.67132 3.70516 4.30345 4.59842 5.04373 5.16292 5.39604 6.09626 6.46698 6.56058 6.78858 6.82919 7.20516 7.28505 7.38562 7.58811 8.03745 8.16181 8.28381 8.44396 8.48767 9.80876 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.011093 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.085644 B = 2523.462026 C = 3233.271186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.281 3.719 3 C -0.035 4.035 4 C -0.093 4.093 5 C 0.108 3.892 6 C -0.443 4.443 7 H 0.090 0.910 8 C 0.073 3.927 9 N -0.781 5.781 10 Si 0.917 3.083 11 H -0.260 1.260 12 H -0.276 1.276 13 H -0.262 1.262 14 C -0.207 4.207 15 C 0.105 3.895 16 O -0.499 6.499 17 C -0.030 4.030 18 F -0.156 7.156 19 H 0.139 0.861 20 H 0.290 0.710 21 H 0.117 0.883 22 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 -3.112 0.168 5.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.033 4.033 3 C -0.040 4.040 4 C -0.115 4.115 5 C 0.105 3.895 6 C -0.471 4.471 7 H 0.108 0.892 8 C -0.148 4.148 9 N -0.405 5.405 10 Si 0.741 3.259 11 H -0.184 1.184 12 H -0.201 1.201 13 H -0.186 1.186 14 C -0.228 4.228 15 C 0.060 3.940 16 O -0.308 6.308 17 C -0.053 4.053 18 F -0.136 7.136 19 H 0.156 0.844 20 H 0.101 0.899 21 H 0.135 0.865 22 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.127 -2.331 0.016 3.155 hybrid contribution 0.600 -0.489 -0.486 0.914 sum 2.727 -2.820 -0.470 3.951 Atomic orbital electron populations 1.81057 1.12328 1.10984 1.08934 1.25832 0.92849 0.92377 0.92230 1.15803 0.83533 1.10700 0.93958 1.21465 0.94512 1.00795 0.94728 1.17349 0.90927 0.88953 0.92298 1.19615 1.01389 1.33940 0.92113 0.89229 1.26038 0.94261 0.92303 1.02180 1.69758 1.17516 1.20281 1.32929 0.86189 0.80001 0.80166 0.79567 1.18423 1.20065 1.18615 1.21240 0.99172 1.11923 0.90464 1.17924 0.87221 1.03359 0.85456 1.84814 1.76613 1.32445 1.36917 1.17420 0.88816 1.19472 0.79551 1.91328 1.80360 1.95349 1.46521 0.84359 0.89859 0.86453 0.76771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.36 18.54 41.84 0.78 -9.58 14 2 C 0.28 6.29 14.95 -22.47 -0.34 5.95 14 3 C -0.04 -0.79 5.73 -106.94 -0.61 -1.40 14 4 C -0.09 -2.13 8.39 -38.42 -0.32 -2.45 14 5 C 0.11 2.47 5.57 -106.89 -0.60 1.87 14 6 C -0.44 -9.97 9.04 -37.78 -0.34 -10.31 14 7 H 0.09 1.89 7.91 -52.49 -0.41 1.47 14 8 C 0.07 1.58 5.13 -17.35 -0.09 1.49 14 9 N -0.78 -17.89 10.97 55.54 0.61 -17.28 14 10 Si 0.92 16.32 29.59 -169.99 -5.03 11.29 14 11 H -0.26 -4.59 7.11 56.52 0.40 -4.19 14 12 H -0.28 -4.88 7.11 56.52 0.40 -4.47 14 13 H -0.26 -4.61 7.11 56.52 0.40 -4.21 14 14 C -0.21 -4.38 9.70 -38.71 -0.38 -4.76 14 15 C 0.11 2.19 6.69 -39.30 -0.26 1.93 14 16 O -0.50 -9.12 13.35 -19.61 -0.26 -9.38 14 17 C -0.03 -0.65 7.31 -38.49 -0.28 -0.94 14 18 F -0.16 -3.46 16.63 2.25 0.04 -3.42 14 19 H 0.14 3.26 6.17 -52.48 -0.32 2.93 14 20 H 0.29 6.08 8.30 -40.82 -0.34 5.74 14 21 H 0.12 2.28 8.06 -52.48 -0.42 1.86 14 22 H 0.38 4.86 9.06 45.56 0.41 5.27 14 LS Contribution 222.39 15.07 3.35 3.35 Total: -1.00 -25.62 222.39 -3.62 -29.24 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 0.12 Total: 4.39 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -3.22 Total: -8.61 kcal Atomic # 7 Polarization: -28.25 SS G_CDS: 1.38 Total: -26.86 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.26 Total: -9.38 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.04 Total: -3.42 kcal Atomic # 14 Polarization: 16.32 SS G_CDS: -5.03 Total: 11.29 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -25.62 -3.62 -29.24 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647713.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.562 kcal (2) G-P(sol) polarization free energy of solvation -25.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds