Wall clock time and date at job start Mon Mar 30 2020 02:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39104 * 120.02871 * 90.91504 * 3 2 1 5 5 C 1.40481 * 119.72326 * 179.71940 * 4 3 2 6 6 C 1.41361 * 120.11306 * 180.27159 * 5 4 3 7 7 H 1.08002 * 120.00048 * 204.79637 * 6 5 4 8 8 C 1.39890 * 120.00129 * 24.79956 * 6 5 4 9 9 N 1.30859 * 119.99539 * 17.78062 * 8 6 5 10 10 Si 1.86800 * 119.99899 * 197.77793 * 8 6 5 11 11 H 1.48505 * 109.47052 * 60.00250 * 10 8 6 12 12 H 1.48497 * 109.46717 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47284 * 299.99945 * 10 8 6 14 14 C 1.40815 * 119.77167 * 0.57460 * 5 4 3 15 15 C 1.37958 * 120.05399 * 359.69658 * 14 5 4 16 16 O 1.35958 * 119.85662 * 179.97438 * 15 14 5 17 17 C 1.39264 * 120.27963 * 0.02562 * 15 14 5 18 18 F 1.35101 * 119.88302 * 179.97438 * 17 15 14 19 19 H 1.08003 * 120.13618 * 359.97438 * 4 3 2 20 20 H 0.97002 * 119.99523 * 180.02562 * 9 8 6 21 21 H 1.08007 * 119.97212 * 179.72643 * 14 5 4 22 22 H 0.96697 * 114.00279 * 270.02101 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2642 0.0202 -1.2042 5 6 4.6689 0.0267 -1.1966 6 6 5.3846 0.0523 -2.4154 7 1 6.3921 -0.3345 -2.4582 8 6 4.7880 0.5787 -3.5659 9 7 3.7360 1.3502 -3.4629 10 14 5.4931 0.1805 -5.2493 11 1 5.4569 -1.2882 -5.4663 12 1 4.6849 0.8552 -6.2966 13 1 6.8974 0.6573 -5.3232 14 6 5.3617 0.0011 0.0291 15 6 4.6620 -0.0239 1.2178 16 8 5.3349 -0.0491 2.3989 17 6 3.2693 -0.0245 1.2130 18 9 2.5922 -0.0496 2.3818 19 1 2.7268 0.0345 -2.1409 20 1 3.3221 1.7149 -4.2607 21 1 6.4417 0.0015 0.0386 22 1 5.5296 -0.9395 2.7218 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575647713.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:23 Heat of formation + Delta-G solvation = -67.191802 kcal Electronic energy + Delta-G solvation = -12502.839737 eV Core-core repulsion = 9936.535531 eV Total energy + Delta-G solvation = -2566.304207 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.49871 -40.05644 -38.16512 -37.24684 -35.25206 -32.08610 -30.41496 -27.17725 -24.63832 -23.11969 -20.66535 -18.54193 -18.32104 -17.91674 -17.35708 -16.62824 -16.34675 -15.38866 -14.95519 -14.68443 -14.43753 -14.34050 -14.08549 -13.63027 -13.43542 -12.86459 -12.60359 -12.31691 -12.04555 -11.95510 -11.39055 -11.01804 -9.65977 -9.32308 -8.78256 -6.46022 0.02254 0.60219 1.45064 1.49669 1.56136 1.58922 1.98508 2.20999 2.61305 2.88146 3.41827 3.48356 3.74418 4.39625 4.77662 4.85894 5.12373 5.18891 5.49064 5.57992 5.77853 5.89184 6.31444 6.44234 6.65269 6.74219 7.01480 8.18850 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.011093 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.085644 B = 2523.462026 C = 3233.271186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.285 3.715 3 C -0.036 4.036 4 C -0.107 4.107 5 C 0.090 3.910 6 C -0.463 4.463 7 H 0.101 0.899 8 C 0.037 3.963 9 N -0.813 5.813 10 Si 0.985 3.015 11 H -0.256 1.256 12 H -0.275 1.275 13 H -0.255 1.255 14 C -0.207 4.207 15 C 0.119 3.881 16 O -0.502 6.502 17 C -0.045 4.045 18 F -0.159 7.159 19 H 0.127 0.873 20 H 0.296 0.704 21 H 0.135 0.865 22 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.312 -3.456 -0.135 6.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.029 4.029 3 C -0.041 4.041 4 C -0.130 4.130 5 C 0.087 3.913 6 C -0.490 4.490 7 H 0.119 0.881 8 C -0.180 4.180 9 N -0.437 5.437 10 Si 0.806 3.194 11 H -0.180 1.180 12 H -0.200 1.200 13 H -0.179 1.179 14 C -0.227 4.227 15 C 0.073 3.927 16 O -0.314 6.314 17 C -0.068 4.068 18 F -0.138 7.138 19 H 0.144 0.856 20 H 0.107 0.893 21 H 0.153 0.847 22 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 3.328 -2.693 -0.256 4.288 hybrid contribution 0.258 -0.378 -0.310 0.553 sum 3.586 -3.071 -0.567 4.755 Atomic orbital electron populations 1.81043 1.12491 1.11346 1.09271 1.25905 0.92916 0.92131 0.91932 1.15826 0.83369 1.10758 0.94140 1.21357 0.94830 1.02399 0.94393 1.17634 0.91046 0.89241 0.93364 1.19964 1.02131 1.34307 0.92625 0.88073 1.26852 0.94254 0.91513 1.05420 1.69814 1.18662 1.21036 1.34184 0.85160 0.79377 0.79886 0.74981 1.18044 1.19954 1.17885 1.21408 1.00026 1.11297 0.89972 1.17871 0.86763 1.01822 0.86229 1.84741 1.76019 1.34879 1.35732 1.17579 0.89466 1.20422 0.79298 1.91317 1.80505 1.95457 1.46502 0.85551 0.89322 0.84675 0.73632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.98 18.54 19.01 0.35 -20.63 14 2 C 0.28 12.73 14.95 88.33 1.32 14.05 14 3 C -0.04 -1.62 5.73 -21.36 -0.12 -1.74 14 4 C -0.11 -4.96 8.39 23.02 0.19 -4.76 14 5 C 0.09 4.08 5.57 -21.33 -0.12 3.96 14 6 C -0.46 -20.42 9.04 23.44 0.21 -20.21 14 7 H 0.10 4.10 7.91 -2.91 -0.02 4.07 14 8 C 0.04 1.59 5.13 85.24 0.44 2.03 14 9 N -0.81 -37.15 10.97 21.82 0.24 -36.92 14 10 Si 0.99 32.34 29.59 68.60 2.03 34.37 14 11 H -0.26 -8.22 7.11 99.48 0.71 -7.51 14 12 H -0.27 -8.89 7.11 99.48 0.71 -8.18 14 13 H -0.25 -8.04 7.11 99.48 0.71 -7.34 14 14 C -0.21 -8.41 9.70 22.83 0.22 -8.19 14 15 C 0.12 4.73 6.69 22.45 0.15 4.88 14 16 O -0.50 -16.97 13.35 -93.08 -1.24 -18.21 14 17 C -0.04 -1.93 7.31 22.98 0.17 -1.77 14 18 F -0.16 -6.85 16.63 44.97 0.75 -6.10 14 19 H 0.13 6.07 6.17 -2.91 -0.02 6.06 14 20 H 0.30 12.35 8.30 -92.71 -0.77 11.58 14 21 H 0.14 4.94 8.06 -2.91 -0.02 4.92 14 22 H 0.41 9.13 9.06 -74.06 -0.67 8.45 14 Total: -1.00 -52.37 222.39 5.20 -47.17 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.62 Total: 12.06 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 2.46 Total: -11.74 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.59 Total: -57.55 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -1.24 Total: -18.21 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.75 Total: -6.10 kcal Atomic # 14 Polarization: 32.34 SS G_CDS: 2.03 Total: 34.37 kcal Total: -52.37 5.20 -47.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647713.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.022 kcal (2) G-P(sol) polarization free energy of solvation -52.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds