Wall clock time and date at job start Mon Mar 30 2020 02:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40703 * 119.96052 * 108.33814 * 3 2 1 5 5 O 1.35741 * 120.07295 * 0.02562 * 4 3 2 6 6 C 1.37802 * 119.86313 * 180.27559 * 4 3 2 7 7 C 1.40823 * 119.78046 * 359.43319 * 6 4 3 8 8 C 1.41057 * 120.04199 * 180.29490 * 7 6 4 9 9 H 1.07998 * 120.00640 * 204.90085 * 8 7 6 10 10 C 1.40153 * 119.99786 * 24.89872 * 8 7 6 11 11 N 1.30703 * 119.99805 * 17.79909 * 10 8 7 12 12 Si 1.86792 * 120.00114 * 197.79261 * 10 8 7 13 13 H 1.48500 * 109.47492 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47141 * 120.00222 * 12 10 8 15 15 H 1.48501 * 109.47526 * 240.00206 * 12 10 8 16 16 C 1.40908 * 119.92241 * 0.56587 * 7 6 4 17 17 C 1.36424 * 120.13634 * 359.71340 * 16 7 6 18 18 F 1.35099 * 119.88741 * 180.02562 * 17 16 7 19 19 H 0.96701 * 113.99838 * 89.99774 * 5 4 3 20 20 H 1.07996 * 120.11422 * 179.72674 * 6 4 3 21 21 H 0.96998 * 119.99869 * 179.97438 * 11 10 8 22 22 H 1.07996 * 119.93211 * 179.72574 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2705 0.3845 -1.1571 5 8 2.5923 0.7547 -2.2732 6 6 4.6485 0.3789 -1.1567 7 6 5.3461 0.0002 0.0065 8 6 6.7566 -0.0015 0.0150 9 1 7.2918 -0.6394 0.7027 10 6 7.4637 0.8248 -0.8691 11 7 6.8617 1.8316 -1.4456 12 14 9.2663 0.4872 -1.2235 13 1 9.7085 -0.7017 -0.4514 14 1 9.4456 0.2290 -2.6748 15 1 10.0781 1.6657 -0.8265 16 6 4.6334 -0.3825 1.1603 17 6 3.2691 -0.3813 1.1545 18 9 2.5909 -0.7486 2.2636 19 1 2.3958 1.7004 -2.3184 20 1 5.1918 0.6685 -2.0440 21 1 7.3511 2.4036 -2.0572 22 1 5.1682 -0.6771 2.0510 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575647824.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:05 Heat of formation + Delta-G solvation = -55.188640 kcal Electronic energy + Delta-G solvation = -12501.002051 eV Core-core repulsion = 9935.218340 eV Total energy + Delta-G solvation = -2565.783711 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.09292 -38.55464 -35.98958 -35.47824 -33.78708 -30.18852 -28.59017 -26.39263 -22.13870 -21.49546 -18.44934 -17.94346 -16.68577 -16.04459 -15.27075 -15.20405 -14.74550 -13.78490 -13.66770 -13.14195 -12.61538 -12.55984 -12.02440 -11.94179 -11.58600 -11.41962 -11.05748 -10.78250 -10.47762 -10.25507 -9.84623 -9.51584 -7.86063 -7.66741 -7.30840 -4.93735 1.85610 2.45753 2.77062 2.84370 2.89693 3.56526 3.62361 3.75966 4.33434 4.81443 5.07220 5.16896 5.47912 6.21975 6.45123 6.50009 6.67972 6.93537 7.04276 7.37506 7.53745 7.62022 7.93553 8.24633 8.29504 8.45617 8.56901 9.59740 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.048475 B = 0.009863 C = 0.008387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.479290 B = 2838.252803 C = 3337.637866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.293 3.707 3 C -0.248 4.248 4 C 0.186 3.814 5 O -0.504 6.504 6 C -0.200 4.200 7 C 0.149 3.851 8 C -0.419 4.419 9 H 0.095 0.905 10 C 0.071 3.929 11 N -0.757 5.757 12 Si 0.920 3.080 13 H -0.254 1.254 14 H -0.266 1.266 15 H -0.269 1.269 16 C -0.264 4.264 17 C 0.185 3.815 18 F -0.154 7.154 19 H 0.384 0.616 20 H 0.136 0.864 21 H 0.292 0.708 22 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 0.513 -0.512 4.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.017 4.017 3 C -0.255 4.255 4 C 0.139 3.861 5 O -0.314 6.314 6 C -0.220 4.220 7 C 0.145 3.855 8 C -0.446 4.446 9 H 0.113 0.887 10 C -0.153 4.153 11 N -0.378 5.378 12 Si 0.743 3.257 13 H -0.178 1.178 14 H -0.191 1.191 15 H -0.194 1.194 16 C -0.284 4.284 17 C 0.164 3.836 18 F -0.133 7.133 19 H 0.239 0.761 20 H 0.154 0.846 21 H 0.104 0.896 22 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.873 0.116 -0.768 2.976 hybrid contribution 1.032 0.467 0.092 1.136 sum 3.905 0.583 -0.675 4.006 Atomic orbital electron populations 1.81034 1.12413 1.14269 1.09541 1.25537 0.92469 0.91636 0.92103 1.15703 0.83870 1.29210 0.96750 1.17888 0.89537 0.95835 0.82804 1.84663 1.77166 1.29435 1.40101 1.21465 0.90786 1.09881 0.99881 1.17313 0.93316 0.85962 0.88939 1.19947 0.91133 1.18300 1.15183 0.88718 1.26204 1.02444 0.93184 0.93442 1.69735 1.39460 1.09428 1.19215 0.86035 0.79920 0.80096 0.79673 1.17759 1.19086 1.19401 1.20641 0.90636 1.16798 1.00375 1.16893 0.89582 0.96718 0.80442 1.91402 1.81030 1.89229 1.51633 0.76123 0.84608 0.89629 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.51 18.54 41.84 0.78 -10.73 14 2 C 0.29 6.67 14.49 -22.47 -0.33 6.34 14 3 C -0.25 -5.54 5.78 -106.24 -0.61 -6.16 14 4 C 0.19 4.06 6.70 -38.81 -0.26 3.80 14 5 O -0.50 -9.92 12.92 -18.93 -0.24 -10.17 14 6 C -0.20 -4.52 8.61 -38.76 -0.33 -4.86 14 7 C 0.15 3.39 5.57 -106.84 -0.60 2.80 14 8 C -0.42 -9.20 9.03 -37.80 -0.34 -9.54 14 9 H 0.09 1.95 7.91 -52.49 -0.42 1.53 14 10 C 0.07 1.47 5.13 -17.31 -0.09 1.38 14 11 N -0.76 -16.16 10.96 55.56 0.61 -15.55 14 12 Si 0.92 15.41 29.60 -169.99 -5.03 10.38 14 13 H -0.25 -4.24 7.11 56.52 0.40 -3.84 14 14 H -0.27 -4.45 7.11 56.52 0.40 -4.05 14 15 H -0.27 -4.47 7.11 56.52 0.40 -4.07 14 16 C -0.26 -5.73 9.68 -39.23 -0.38 -6.11 14 17 C 0.19 4.08 7.22 -39.44 -0.28 3.79 14 18 F -0.15 -3.31 16.78 2.25 0.04 -3.28 14 19 H 0.38 5.79 9.06 45.56 0.41 6.20 14 20 H 0.14 3.12 6.17 -52.49 -0.32 2.80 14 21 H 0.29 5.56 8.29 -40.82 -0.34 5.22 14 22 H 0.12 2.35 8.06 -52.49 -0.42 1.93 14 LS Contribution 221.81 15.07 3.34 3.34 Total: -1.00 -25.20 221.81 -3.62 -28.82 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 0.12 Total: 5.73 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -3.22 Total: -8.55 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 1.38 Total: -26.28 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.24 Total: -10.17 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.04 Total: -3.28 kcal Atomic # 14 Polarization: 15.41 SS G_CDS: -5.03 Total: 10.38 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -25.20 -3.62 -28.82 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647824.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.370 kcal (2) G-P(sol) polarization free energy of solvation -25.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds