Wall clock time and date at job start Mon Mar 30 2020 02:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40703 * 119.96052 * 108.33814 * 3 2 1 5 5 O 1.35741 * 120.07295 * 0.02562 * 4 3 2 6 6 C 1.37802 * 119.86313 * 180.27559 * 4 3 2 7 7 C 1.40823 * 119.78046 * 359.43319 * 6 4 3 8 8 C 1.41057 * 120.04199 * 180.29490 * 7 6 4 9 9 H 1.07998 * 120.00640 * 204.90085 * 8 7 6 10 10 C 1.40153 * 119.99786 * 24.89872 * 8 7 6 11 11 N 1.30703 * 119.99805 * 17.79909 * 10 8 7 12 12 Si 1.86792 * 120.00114 * 197.79261 * 10 8 7 13 13 H 1.48500 * 109.47492 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47141 * 120.00222 * 12 10 8 15 15 H 1.48501 * 109.47526 * 240.00206 * 12 10 8 16 16 C 1.40908 * 119.92241 * 0.56587 * 7 6 4 17 17 C 1.36424 * 120.13634 * 359.71340 * 16 7 6 18 18 F 1.35099 * 119.88741 * 180.02562 * 17 16 7 19 19 H 0.96701 * 113.99838 * 89.99774 * 5 4 3 20 20 H 1.07996 * 120.11422 * 179.72674 * 6 4 3 21 21 H 0.96998 * 119.99869 * 179.97438 * 11 10 8 22 22 H 1.07996 * 119.93211 * 179.72574 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2705 0.3845 -1.1571 5 8 2.5923 0.7547 -2.2732 6 6 4.6485 0.3789 -1.1567 7 6 5.3461 0.0002 0.0065 8 6 6.7566 -0.0015 0.0150 9 1 7.2918 -0.6394 0.7027 10 6 7.4637 0.8248 -0.8691 11 7 6.8617 1.8316 -1.4456 12 14 9.2663 0.4872 -1.2235 13 1 9.7085 -0.7017 -0.4514 14 1 9.4456 0.2290 -2.6748 15 1 10.0781 1.6657 -0.8265 16 6 4.6334 -0.3825 1.1603 17 6 3.2691 -0.3813 1.1545 18 9 2.5909 -0.7486 2.2636 19 1 2.3958 1.7004 -2.3184 20 1 5.1918 0.6685 -2.0440 21 1 7.3511 2.4036 -2.0572 22 1 5.1682 -0.6771 2.0510 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575647824.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:05 Heat of formation + Delta-G solvation = -70.073525 kcal Electronic energy + Delta-G solvation = -12501.647508 eV Core-core repulsion = 9935.218340 eV Total energy + Delta-G solvation = -2566.429168 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.80936 -40.22305 -37.62567 -37.25504 -35.43567 -31.88821 -30.28484 -28.08710 -23.83288 -23.18489 -20.10600 -19.67064 -18.32849 -17.70763 -16.92183 -16.80154 -16.44764 -15.38408 -15.33729 -14.74575 -14.37018 -14.26868 -13.73964 -13.59696 -13.15612 -12.90961 -12.73891 -12.26566 -12.08155 -11.83553 -11.47355 -11.09283 -9.57528 -9.37867 -8.89724 -6.63392 0.15500 0.76442 1.42157 1.48425 1.62985 1.83116 2.08639 2.18459 2.64428 3.18926 3.32163 3.45572 3.81716 4.54046 4.75144 4.83957 5.04943 5.30360 5.34043 5.66525 5.83990 5.94298 6.30249 6.57545 6.61261 6.72543 6.98291 8.04296 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.048475 B = 0.009863 C = 0.008387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.479290 B = 2838.252803 C = 3337.637866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.299 3.701 3 C -0.265 4.265 4 C 0.194 3.806 5 O -0.509 6.509 6 C -0.215 4.215 7 C 0.128 3.872 8 C -0.432 4.432 9 H 0.105 0.895 10 C 0.037 3.963 11 N -0.777 5.777 12 Si 0.991 3.009 13 H -0.251 1.251 14 H -0.264 1.264 15 H -0.264 1.264 16 C -0.267 4.267 17 C 0.182 3.818 18 F -0.153 7.153 19 H 0.404 0.596 20 H 0.129 0.871 21 H 0.303 0.697 22 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.048 0.570 -0.717 6.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.011 4.011 3 C -0.273 4.273 4 C 0.147 3.853 5 O -0.321 6.321 6 C -0.235 4.235 7 C 0.124 3.876 8 C -0.457 4.457 9 H 0.123 0.877 10 C -0.186 4.186 11 N -0.399 5.399 12 Si 0.810 3.190 13 H -0.174 1.174 14 H -0.189 1.189 15 H -0.188 1.188 16 C -0.287 4.287 17 C 0.160 3.840 18 F -0.132 7.132 19 H 0.263 0.737 20 H 0.147 0.853 21 H 0.115 0.885 22 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.304 0.192 -0.970 4.417 hybrid contribution 0.636 0.508 0.127 0.824 sum 4.940 0.700 -0.843 5.061 Atomic orbital electron populations 1.81027 1.12710 1.15113 1.10023 1.25608 0.92506 0.91238 0.91713 1.15779 0.83651 1.30597 0.97273 1.17851 0.89377 0.95104 0.82942 1.84597 1.76858 1.31375 1.39281 1.21418 0.91076 1.11255 0.99799 1.17599 0.94104 0.86592 0.89342 1.20328 0.91158 1.18392 1.15851 0.87685 1.27021 1.06376 0.92503 0.92660 1.69747 1.41319 1.09788 1.19001 0.84985 0.74605 0.80016 0.79374 1.17408 1.18851 1.18818 1.20778 0.90571 1.16617 1.00718 1.16961 0.89780 0.96772 0.80442 1.91399 1.81027 1.89213 1.51529 0.73736 0.85345 0.88491 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.45 18.54 19.00 0.35 -23.09 14 2 C 0.30 13.45 14.49 88.33 1.28 14.73 14 3 C -0.27 -11.75 5.78 -20.91 -0.12 -11.87 14 4 C 0.19 8.39 6.70 22.77 0.15 8.54 14 5 O -0.51 -19.58 12.92 -90.65 -1.17 -20.75 14 6 C -0.22 -9.67 8.61 22.80 0.20 -9.48 14 7 C 0.13 5.76 5.57 -21.30 -0.12 5.64 14 8 C -0.43 -18.41 9.03 23.43 0.21 -18.19 14 9 H 0.11 4.15 7.91 -2.91 -0.02 4.12 14 10 C 0.04 1.46 5.13 85.33 0.44 1.89 14 11 N -0.78 -32.24 10.96 21.86 0.24 -32.00 14 12 Si 0.99 29.75 29.60 68.60 2.03 31.78 14 13 H -0.25 -7.37 7.11 99.48 0.71 -6.66 14 14 H -0.26 -7.81 7.11 99.48 0.71 -7.11 14 15 H -0.26 -7.67 7.11 99.48 0.71 -6.97 14 16 C -0.27 -11.38 9.68 22.50 0.22 -11.17 14 17 C 0.18 7.92 7.22 22.36 0.16 8.09 14 18 F -0.15 -6.47 16.78 44.97 0.75 -5.72 14 19 H 0.40 11.74 9.06 -74.06 -0.67 11.07 14 20 H 0.13 5.89 6.17 -2.91 -0.02 5.87 14 21 H 0.30 11.09 8.29 -92.71 -0.77 10.32 14 22 H 0.13 5.13 8.06 -2.91 -0.02 5.11 14 Total: -1.00 -51.08 221.81 5.24 -45.84 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.62 Total: 15.76 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 2.42 Total: -11.82 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.59 Total: -55.09 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -1.17 Total: -20.75 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.75 Total: -5.72 kcal Atomic # 14 Polarization: 29.75 SS G_CDS: 2.03 Total: 31.78 kcal Total: -51.08 5.24 -45.84 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647824.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.235 kcal (2) G-P(sol) polarization free energy of solvation -51.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds