Wall clock time and date at job start Mon Mar 30 2020 02:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39946 * 119.87772 * 213.27804 * 3 2 1 5 5 C 1.37901 * 119.92241 * 179.74155 * 4 3 2 6 6 O 1.35688 * 120.15992 * 180.27475 * 5 4 3 7 7 C 1.41585 * 119.68205 * 0.52831 * 5 4 3 8 8 C 1.40752 * 120.11745 * 179.73884 * 7 5 4 9 9 H 1.07995 * 120.00569 * 334.60314 * 8 7 5 10 10 C 1.40198 * 119.99540 * 154.87360 * 8 7 5 11 11 N 1.30701 * 119.99901 * 341.93498 * 10 8 7 12 12 Si 1.86795 * 119.99503 * 161.93517 * 10 8 7 13 13 H 1.48499 * 109.47598 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47149 * 120.00212 * 12 10 8 15 15 H 1.48504 * 109.47219 * 239.99882 * 12 10 8 16 16 C 1.40861 * 119.76390 * 359.47458 * 7 5 4 17 17 C 1.36321 * 120.06738 * 0.26676 * 16 7 5 18 18 F 1.35106 * 119.83885 * 180.02562 * 17 16 7 19 19 H 1.07996 * 120.04042 * 0.02562 * 4 3 2 20 20 H 0.96697 * 114.00019 * 270.26157 * 6 5 4 21 21 H 0.96998 * 119.99359 * 180.02562 * 11 10 8 22 22 H 1.07999 * 119.96732 * 180.29962 * 16 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2647 1.0154 0.6658 5 6 4.6437 1.0140 0.6709 6 8 5.3240 1.9924 1.3197 7 6 5.3462 -0.0104 -0.0086 8 6 6.7537 -0.0177 -0.0139 9 1 7.2991 0.9053 0.1166 10 6 7.4477 -1.2224 -0.1944 11 7 6.8372 -2.3627 -0.0065 12 14 9.2448 -1.1977 -0.7033 13 1 9.6983 0.2087 -0.8509 14 1 10.0625 -1.8757 0.3344 15 1 9.4023 -1.9065 -1.9987 16 6 4.6316 -1.0253 -0.6745 17 6 3.2684 -1.0172 -0.6687 18 9 2.5876 -1.9932 -1.3085 19 1 2.7230 1.7962 1.1789 20 1 5.5209 2.7643 0.7716 21 1 7.3175 -3.1962 -0.1311 22 1 5.1642 -1.8109 -1.1898 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649602.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:47 Heat of formation + Delta-G solvation = -69.832255 kcal Electronic energy + Delta-G solvation = -12534.742743 eV Core-core repulsion = 9968.324037 eV Total energy + Delta-G solvation = -2566.418706 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.73567 -40.08336 -37.67327 -36.83279 -35.61266 -32.06183 -30.15896 -27.94442 -24.02922 -23.01094 -20.13135 -19.69220 -18.02714 -17.82462 -17.03333 -16.46979 -16.38974 -15.44227 -14.82007 -14.64164 -14.47748 -14.28511 -13.99204 -13.60878 -13.36448 -12.92279 -12.64442 -12.31623 -12.02974 -11.93289 -11.18233 -11.04101 -9.69172 -9.29271 -8.88513 -6.58444 0.17604 0.77412 1.40418 1.45570 1.61216 1.80888 2.05319 2.15857 2.67916 3.24952 3.35584 3.58950 3.95024 4.27079 4.79756 4.87770 5.05648 5.30813 5.43571 5.58329 5.69416 6.00231 6.31804 6.52547 6.56509 6.72188 7.34921 8.02141 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.042980 B = 0.010660 C = 0.008754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.308384 B = 2625.956433 C = 3197.942327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.297 3.703 3 C -0.224 4.224 4 C -0.027 4.027 5 C -0.025 4.025 6 O -0.492 6.492 7 C 0.096 3.904 8 C -0.419 4.419 9 H 0.107 0.893 10 C 0.031 3.969 11 N -0.783 5.783 12 Si 0.993 3.007 13 H -0.246 1.246 14 H -0.266 1.266 15 H -0.263 1.263 16 C -0.215 4.215 17 C 0.150 3.850 18 F -0.160 7.160 19 H 0.139 0.861 20 H 0.385 0.615 21 H 0.303 0.697 22 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.173 3.395 -1.577 7.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.013 4.013 3 C -0.231 4.231 4 C -0.048 4.048 5 C -0.071 4.071 6 O -0.301 6.301 7 C 0.091 3.909 8 C -0.444 4.444 9 H 0.125 0.875 10 C -0.190 4.190 11 N -0.405 5.405 12 Si 0.812 3.188 13 H -0.169 1.169 14 H -0.190 1.190 15 H -0.188 1.188 16 C -0.236 4.236 17 C 0.128 3.872 18 F -0.139 7.139 19 H 0.157 0.843 20 H 0.240 0.760 21 H 0.114 0.886 22 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.370 2.704 -1.101 5.255 hybrid contribution 0.753 -0.268 -0.651 1.031 sum 5.123 2.436 -1.752 5.937 Atomic orbital electron populations 1.81062 1.12719 1.11146 1.13773 1.25720 0.92544 0.91731 0.91307 1.15161 0.83342 1.04800 1.19765 1.20793 0.93085 0.95841 0.95040 1.18280 0.88767 0.95645 1.04397 1.84756 1.76415 1.29285 1.39664 1.18092 0.94569 0.90666 0.87549 1.20191 0.91400 0.96025 1.36820 0.87487 1.27156 1.06602 0.93903 0.91387 1.69780 1.41500 1.00400 1.28796 0.84955 0.74340 0.80676 0.78791 1.16922 1.19034 1.18770 1.20702 0.90192 1.04593 1.08090 1.17336 0.89999 0.85570 0.94267 1.91371 1.80822 1.61523 1.80199 0.84315 0.76025 0.88555 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.59 18.54 19.00 0.35 -22.24 14 2 C 0.30 12.84 14.94 88.33 1.32 14.16 14 3 C -0.22 -9.61 5.76 -21.07 -0.12 -9.73 14 4 C -0.03 -1.05 9.67 22.60 0.22 -0.83 14 5 C -0.03 -1.04 6.73 23.02 0.15 -0.88 14 6 O -0.49 -17.81 12.78 -90.06 -1.15 -18.96 14 7 C 0.10 4.38 5.58 -21.20 -0.12 4.26 14 8 C -0.42 -18.31 8.70 23.36 0.20 -18.10 14 9 H 0.11 4.31 7.65 -2.91 -0.02 4.29 14 10 C 0.03 1.29 5.12 85.34 0.44 1.73 14 11 N -0.78 -34.72 10.97 21.87 0.24 -34.48 14 12 Si 0.99 30.77 29.60 68.60 2.03 32.80 14 13 H -0.25 -7.27 7.11 99.48 0.71 -6.56 14 14 H -0.27 -8.08 7.11 99.48 0.71 -7.38 14 15 H -0.26 -7.97 7.11 99.48 0.71 -7.27 14 16 C -0.22 -10.10 8.58 22.46 0.19 -9.91 14 17 C 0.15 6.85 7.21 22.37 0.16 7.01 14 18 F -0.16 -7.33 16.78 44.97 0.75 -6.58 14 19 H 0.14 4.69 8.06 -2.91 -0.02 4.67 14 20 H 0.38 9.91 9.06 -74.06 -0.67 9.24 14 21 H 0.30 11.90 8.29 -92.71 -0.77 11.13 14 22 H 0.13 6.11 6.16 -2.91 -0.02 6.10 14 Total: -1.00 -52.81 221.51 5.29 -47.52 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.62 Total: 14.22 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 2.45 Total: -12.28 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.59 Total: -56.72 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -1.15 Total: -18.96 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.75 Total: -6.58 kcal Atomic # 14 Polarization: 30.77 SS G_CDS: 2.03 Total: 32.80 kcal Total: -52.81 5.29 -47.52 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649602.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.310 kcal (2) G-P(sol) polarization free energy of solvation -52.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds