Wall clock time and date at job start Mon Mar 30 2020 02:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39023 * 120.04218 * 226.27604 * 3 2 1 5 5 C 1.40424 * 119.67552 * 179.97438 * 4 3 2 6 6 C 1.41198 * 120.11506 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99563 * 205.96631 * 6 5 4 8 8 C 1.39862 * 120.00168 * 25.69047 * 6 5 4 9 9 N 1.30904 * 119.99768 * 16.72256 * 8 6 5 10 10 Si 1.86797 * 119.99691 * 196.72423 * 8 6 5 11 11 H 1.48499 * 109.47505 * 60.00085 * 10 8 6 12 12 H 1.48508 * 109.46792 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47363 * 299.99640 * 10 8 6 14 14 C 1.41281 * 119.76446 * 0.28257 * 5 4 3 15 15 F 1.35098 * 119.95474 * 179.72358 * 14 5 4 16 16 C 1.37694 * 120.08586 * 359.41881 * 14 5 4 17 17 C 1.38986 * 120.33150 * 0.60049 * 16 14 5 18 18 O 1.35502 * 119.88704 * 179.69784 * 17 16 14 19 19 H 1.07992 * 120.16343 * 0.02562 * 4 3 2 20 20 H 0.97000 * 120.00032 * 180.02562 * 9 8 6 21 21 H 1.08004 * 119.83893 * 180.30135 * 16 14 5 22 22 H 0.96708 * 113.99739 * 269.98302 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2636 0.8328 0.8697 5 6 4.6678 0.8268 0.8636 6 6 5.3837 1.6678 1.7434 7 1 6.3823 1.9907 1.4886 8 6 4.7974 2.0872 2.9419 9 7 3.7465 1.4627 3.4101 10 14 5.5140 3.5385 3.8743 11 1 5.4753 4.7479 3.0135 12 1 4.7157 3.7803 5.1031 13 1 6.9204 3.2415 4.2476 14 6 5.3617 -0.0197 -0.0297 15 9 6.7126 -0.0244 -0.0428 16 6 4.6629 -0.8444 -0.8827 17 6 3.2731 -0.8413 -0.8801 18 8 2.5945 -1.6521 -1.7276 19 1 2.7267 1.4800 1.5473 20 1 3.3396 1.7538 4.2412 21 1 5.1975 -1.4934 -1.5606 22 1 2.3976 -1.2491 -2.5844 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650241.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:31 Heat of formation + Delta-G solvation = -51.784496 kcal Electronic energy + Delta-G solvation = -12539.623973 eV Core-core repulsion = 9973.987877 eV Total energy + Delta-G solvation = -2565.636096 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.55983 -38.60768 -36.01590 -35.60115 -33.56075 -29.91186 -29.57152 -25.28832 -22.46834 -21.67965 -18.56443 -17.76561 -16.59910 -15.92348 -15.45623 -14.89698 -14.26948 -13.73518 -13.39915 -12.97356 -12.85533 -12.79275 -12.17304 -11.92167 -11.83834 -11.35694 -10.89633 -10.75571 -10.38301 -10.13650 -9.87810 -9.43268 -7.90920 -7.67082 -7.12326 -4.69389 1.74836 2.32826 2.91143 2.93627 2.96540 3.43502 3.68595 3.72511 4.32471 4.81911 4.91319 5.14070 5.73361 5.82131 6.50569 6.54182 6.81384 6.84211 6.95088 7.31935 7.51181 7.58263 8.06331 8.20142 8.31986 8.40038 8.51933 9.81606 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.032470 B = 0.012191 C = 0.009091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.123010 B = 2296.256584 C = 3079.199496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.287 3.713 3 C -0.047 4.047 4 C -0.083 4.083 5 C 0.077 3.923 6 C -0.439 4.439 7 H 0.091 0.909 8 C 0.073 3.927 9 N -0.782 5.782 10 Si 0.919 3.081 11 H -0.260 1.260 12 H -0.275 1.275 13 H -0.261 1.261 14 C 0.007 3.993 15 F -0.153 7.153 16 C -0.136 4.136 17 C 0.027 3.973 18 O -0.494 6.494 19 H 0.140 0.860 20 H 0.290 0.710 21 H 0.119 0.881 22 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 1.499 -2.817 4.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.027 4.027 3 C -0.051 4.051 4 C -0.106 4.106 5 C 0.073 3.927 6 C -0.466 4.466 7 H 0.109 0.891 8 C -0.148 4.148 9 N -0.405 5.405 10 Si 0.743 3.257 11 H -0.184 1.184 12 H -0.200 1.200 13 H -0.185 1.185 14 C -0.014 4.014 15 F -0.132 7.132 16 C -0.156 4.156 17 C -0.021 4.021 18 O -0.302 6.302 19 H 0.157 0.843 20 H 0.102 0.898 21 H 0.137 0.863 22 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.727 1.081 -2.120 2.489 hybrid contribution 0.902 0.804 0.121 1.215 sum 1.629 1.886 -1.999 3.195 Atomic orbital electron populations 1.81057 1.12478 1.10511 1.10203 1.25886 0.92865 0.91868 0.92080 1.16380 0.83543 1.02220 1.02994 1.21225 0.93330 0.98370 0.97661 1.17489 0.91661 0.91705 0.91816 1.19548 1.02141 1.23777 1.01166 0.89092 1.26015 0.94264 0.96944 0.97527 1.69769 1.17678 1.34270 1.18815 0.86153 0.80072 0.80885 0.78626 1.18386 1.19997 1.18546 1.17641 0.76247 1.02440 1.05070 1.91322 1.29730 1.95934 1.96203 1.20592 0.93104 1.00675 1.01231 1.17383 0.88409 0.98835 0.97458 1.84794 1.76465 1.41089 1.27815 0.84265 0.89840 0.86329 0.78119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.24 18.54 41.84 0.78 -9.46 14 2 C 0.29 6.17 14.85 -22.47 -0.33 5.83 14 3 C -0.05 -1.01 5.75 -106.74 -0.61 -1.63 14 4 C -0.08 -1.92 8.37 -38.47 -0.32 -2.24 14 5 C 0.08 1.83 5.57 -106.79 -0.59 1.24 14 6 C -0.44 -10.43 8.76 -37.85 -0.33 -10.77 14 7 H 0.09 2.11 7.73 -52.49 -0.41 1.70 14 8 C 0.07 1.64 5.15 -17.34 -0.09 1.55 14 9 N -0.78 -18.23 10.96 55.54 0.61 -17.62 14 10 Si 0.92 16.89 29.59 -169.99 -5.03 11.86 14 11 H -0.26 -4.72 7.11 56.52 0.40 -4.32 14 12 H -0.28 -4.96 7.11 56.52 0.40 -4.55 14 13 H -0.26 -4.78 7.11 56.52 0.40 -4.38 14 14 C 0.01 0.16 7.30 -38.62 -0.28 -0.12 14 15 F -0.15 -3.41 16.70 2.25 0.04 -3.38 14 16 C -0.14 -2.77 9.92 -39.50 -0.39 -3.16 14 17 C 0.03 0.55 6.73 -38.36 -0.26 0.29 14 18 O -0.49 -9.01 12.90 -18.20 -0.23 -9.24 14 19 H 0.14 3.30 6.19 -52.49 -0.32 2.97 14 20 H 0.29 6.17 8.30 -40.82 -0.34 5.83 14 21 H 0.12 2.13 8.06 -52.48 -0.42 1.70 14 22 H 0.37 4.89 9.06 45.56 0.41 5.31 14 LS Contribution 221.72 15.07 3.34 3.34 Total: -1.00 -25.65 221.72 -3.59 -29.25 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 0.13 Total: 4.26 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -3.22 Total: -9.01 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 1.38 Total: -27.08 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.23 Total: -9.24 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.04 Total: -3.38 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -25.65 -3.59 -29.25 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650241.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.538 kcal (2) G-P(sol) polarization free energy of solvation -25.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds