Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40239 * 119.94560 * 199.88070 * 3 2 1 5 5 C 1.38041 * 120.42164 * 180.02562 * 4 3 2 6 6 F 1.35092 * 119.84390 * 179.97438 * 5 4 3 7 7 C 1.38810 * 120.30670 * 359.74052 * 5 4 3 8 8 O 1.35575 * 120.05850 * 180.25766 * 7 5 4 9 9 C 1.41349 * 119.88418 * 0.53275 * 7 5 4 10 10 C 1.41226 * 120.20826 * 179.74734 * 9 7 5 11 11 H 1.08005 * 119.99832 * 334.33835 * 10 9 7 12 12 C 1.39903 * 120.00453 * 154.34229 * 10 9 7 13 13 N 1.30878 * 119.99434 * 334.57065 * 12 10 9 14 14 Si 1.86801 * 120.00437 * 154.56672 * 12 10 9 15 15 H 1.48496 * 109.46929 * 180.02562 * 14 12 10 16 16 H 1.48494 * 109.47178 * 300.00493 * 14 12 10 17 17 H 1.48507 * 109.46509 * 60.00264 * 14 12 10 18 18 C 1.39005 * 119.94783 * 19.89921 * 3 2 1 19 19 H 1.08004 * 119.78689 * 359.97438 * 4 3 2 20 20 H 0.96697 * 114.00015 * 270.27942 * 8 7 5 21 21 H 0.96997 * 120.00393 * 354.16838 * 13 12 10 22 22 H 1.07993 * 120.15214 * 0.02633 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2675 1.1437 0.4132 5 6 4.6478 1.1553 0.4166 6 9 5.3099 2.2629 0.8165 7 6 5.3587 0.0325 0.0157 8 8 6.7144 0.0476 0.0260 9 6 4.6669 -1.1247 -0.4089 10 6 5.3833 -2.2690 -0.8233 11 1 6.3853 -2.1668 -1.2133 12 6 4.7952 -3.5349 -0.7287 13 7 3.8520 -3.7540 0.1518 14 14 5.3560 -4.9122 -1.8591 15 1 4.5818 -6.1438 -1.5605 16 1 5.1295 -4.5161 -3.2722 17 1 6.8023 -5.1715 -1.6434 18 6 3.2624 -1.1316 -0.4100 19 1 2.7227 2.0208 0.7301 20 1 7.1106 0.3548 -0.8009 21 1 3.6193 -3.0660 0.7947 22 1 2.7244 -2.0120 -0.7290 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650424.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = -57.080730 kcal Electronic energy + Delta-G solvation = -12582.078689 eV Core-core repulsion = 10016.212932 eV Total energy + Delta-G solvation = -2565.865758 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.07534 -38.57573 -36.46864 -35.33212 -34.09090 -29.77692 -29.06320 -25.62767 -22.67146 -21.59139 -19.14790 -17.61382 -16.95056 -15.88946 -15.27985 -15.08068 -14.34365 -14.13869 -13.46224 -13.21109 -13.06308 -12.77184 -12.52083 -12.05905 -11.58518 -11.28925 -11.12636 -10.67457 -10.51904 -10.24282 -9.58864 -9.25176 -8.07533 -7.83175 -7.52192 -4.84902 1.58748 2.23066 2.98924 3.02893 3.21314 3.21776 3.54210 3.78352 4.26009 4.52890 4.86896 5.14282 5.41554 5.92411 6.12879 6.37614 6.75487 6.81001 7.11775 7.15604 7.35275 7.61711 7.66504 8.02771 8.06432 8.35919 8.68054 9.66735 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.027066 B = 0.013251 C = 0.009215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.248285 B = 2112.589379 C = 3037.868073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.278 3.722 3 C 0.017 3.983 4 C -0.245 4.245 5 C 0.115 3.885 6 F -0.152 7.152 7 C -0.036 4.036 8 O -0.478 6.478 9 C 0.083 3.917 10 C -0.475 4.475 11 H 0.090 0.910 12 C 0.035 3.965 13 N -0.773 5.773 14 Si 1.069 2.931 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.161 4.161 19 H 0.116 0.884 20 H 0.360 0.640 21 H 0.303 0.697 22 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 1.543 -2.855 4.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.036 4.036 3 C 0.013 3.987 4 C -0.267 4.267 5 C 0.095 3.905 6 F -0.131 7.131 7 C -0.084 4.084 8 O -0.285 6.285 9 C 0.079 3.921 10 C -0.502 4.502 11 H 0.108 0.892 12 C -0.190 4.190 13 N -0.395 5.395 14 Si 0.891 3.109 15 H -0.195 1.195 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.184 4.184 19 H 0.134 0.866 20 H 0.212 0.788 21 H 0.117 0.883 22 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.294 -0.222 -2.611 2.922 hybrid contribution 0.880 2.113 0.103 2.291 sum 2.174 1.891 -2.507 3.819 Atomic orbital electron populations 1.81104 1.12370 1.09263 1.10411 1.26033 0.92969 0.92189 0.92452 1.15507 0.83021 0.95660 1.04496 1.19945 0.91450 0.98990 1.16360 1.17632 0.89766 0.81972 1.01082 1.91374 1.81325 1.51658 1.88721 1.18556 0.82591 0.94202 1.13030 1.84804 1.16132 1.88623 1.38938 1.17599 0.91011 0.93045 0.90493 1.20580 1.03159 0.91756 1.34670 0.89191 1.27290 0.92679 1.01413 0.97580 1.70511 1.21039 1.38374 1.09557 0.83564 0.77203 0.74603 0.75560 1.19506 1.19586 1.19642 1.21223 0.93726 0.97167 1.06238 0.86578 0.78767 0.88299 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.56 18.54 41.84 0.78 -8.78 14 2 C 0.28 5.67 15.31 -22.48 -0.34 5.33 14 3 C 0.02 0.35 5.73 -106.94 -0.61 -0.26 14 4 C -0.24 -4.96 9.71 -38.90 -0.38 -5.34 14 5 C 0.12 2.46 7.28 -39.44 -0.29 2.17 14 6 F -0.15 -3.13 17.09 2.25 0.04 -3.09 14 7 C -0.04 -0.81 6.75 -38.19 -0.26 -1.07 14 8 O -0.48 -10.00 12.63 -18.42 -0.23 -10.23 14 9 C 0.08 1.92 5.31 -106.75 -0.57 1.35 14 10 C -0.48 -11.03 8.64 -37.82 -0.33 -11.35 14 11 H 0.09 2.01 7.71 -52.48 -0.40 1.61 14 12 C 0.03 0.78 4.93 -17.34 -0.09 0.69 14 13 N -0.77 -18.47 12.31 55.55 0.68 -17.78 14 14 Si 1.07 19.03 30.00 -169.99 -5.10 13.93 14 15 H -0.27 -4.88 7.11 56.52 0.40 -4.48 14 16 H -0.27 -4.62 7.11 56.52 0.40 -4.22 14 17 H -0.27 -4.61 7.11 56.52 0.40 -4.20 14 18 C -0.16 -3.60 7.63 -38.47 -0.29 -3.89 14 19 H 0.12 2.12 8.06 -52.48 -0.42 1.70 14 20 H 0.36 5.80 9.06 45.56 0.41 6.22 14 21 H 0.30 7.41 6.68 -40.82 -0.27 7.14 14 22 H 0.12 2.85 6.48 -52.49 -0.34 2.51 14 LS Contribution 221.18 15.07 3.33 3.33 Total: -1.00 -25.24 221.18 -3.48 -28.72 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 0.18 Total: 6.27 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -3.15 Total: -12.37 kcal Atomic # 7 Polarization: -28.02 SS G_CDS: 1.46 Total: -26.56 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.23 Total: -10.23 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.09 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.10 Total: 13.93 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -25.24 -3.48 -28.72 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650424.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.366 kcal (2) G-P(sol) polarization free energy of solvation -25.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds