Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40239 * 119.94560 * 199.88070 * 3 2 1 5 5 C 1.38041 * 120.42164 * 180.02562 * 4 3 2 6 6 F 1.35092 * 119.84390 * 179.97438 * 5 4 3 7 7 C 1.38810 * 120.30670 * 359.74052 * 5 4 3 8 8 O 1.35575 * 120.05850 * 180.25766 * 7 5 4 9 9 C 1.41349 * 119.88418 * 0.53275 * 7 5 4 10 10 C 1.41226 * 120.20826 * 179.74734 * 9 7 5 11 11 H 1.08005 * 119.99832 * 334.33835 * 10 9 7 12 12 C 1.39903 * 120.00453 * 154.34229 * 10 9 7 13 13 N 1.30878 * 119.99434 * 334.57065 * 12 10 9 14 14 Si 1.86801 * 120.00437 * 154.56672 * 12 10 9 15 15 H 1.48496 * 109.46929 * 180.02562 * 14 12 10 16 16 H 1.48494 * 109.47178 * 300.00493 * 14 12 10 17 17 H 1.48507 * 109.46509 * 60.00264 * 14 12 10 18 18 C 1.39005 * 119.94783 * 19.89921 * 3 2 1 19 19 H 1.08004 * 119.78689 * 359.97438 * 4 3 2 20 20 H 0.96697 * 114.00015 * 270.27942 * 8 7 5 21 21 H 0.96997 * 120.00393 * 354.16838 * 13 12 10 22 22 H 1.07993 * 120.15214 * 0.02633 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2675 1.1437 0.4132 5 6 4.6478 1.1553 0.4166 6 9 5.3099 2.2629 0.8165 7 6 5.3587 0.0325 0.0157 8 8 6.7144 0.0476 0.0260 9 6 4.6669 -1.1247 -0.4089 10 6 5.3833 -2.2690 -0.8233 11 1 6.3853 -2.1668 -1.2133 12 6 4.7952 -3.5349 -0.7287 13 7 3.8520 -3.7540 0.1518 14 14 5.3560 -4.9122 -1.8591 15 1 4.5818 -6.1438 -1.5605 16 1 5.1295 -4.5161 -3.2722 17 1 6.8023 -5.1715 -1.6434 18 6 3.2624 -1.1316 -0.4100 19 1 2.7227 2.0208 0.7301 20 1 7.1106 0.3548 -0.8009 21 1 3.6193 -3.0660 0.7947 22 1 2.7244 -2.0120 -0.7290 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575650424.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = -71.938217 kcal Electronic energy + Delta-G solvation = -12582.722958 eV Core-core repulsion = 10016.212932 eV Total energy + Delta-G solvation = -2566.510027 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.74093 -40.28336 -38.14759 -37.01519 -35.78542 -31.49787 -30.77053 -27.35402 -24.37711 -23.30238 -20.83592 -19.29849 -18.64537 -17.59159 -16.96811 -16.76088 -15.91840 -15.71728 -15.13957 -14.88779 -14.70646 -14.45433 -14.20498 -13.73872 -13.20155 -12.97252 -12.66561 -12.30568 -11.96391 -11.84277 -11.22610 -10.91322 -9.80378 -9.54770 -9.25254 -6.61401 -0.11826 0.52346 1.52654 1.55691 1.58157 1.84697 1.92933 2.32347 2.59678 2.83427 3.17408 3.46426 3.74696 4.29650 4.38751 4.67241 5.02277 5.15102 5.38511 5.43562 5.61238 5.88455 5.95579 6.34710 6.37308 6.65616 7.11002 7.90995 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.027066 B = 0.013251 C = 0.009215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.248285 B = 2112.589379 C = 3037.868073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.288 3.712 3 C 0.021 3.979 4 C -0.227 4.227 5 C 0.108 3.892 6 F -0.146 7.146 7 C -0.039 4.039 8 O -0.489 6.489 9 C 0.065 3.935 10 C -0.503 4.503 11 H 0.092 0.908 12 C 0.006 3.994 13 N -0.799 5.799 14 Si 1.116 2.884 15 H -0.276 1.276 16 H -0.258 1.258 17 H -0.256 1.256 18 C -0.169 4.169 19 H 0.142 0.858 20 H 0.383 0.617 21 H 0.289 0.711 22 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.760 2.017 -3.306 5.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.026 4.026 3 C 0.017 3.983 4 C -0.249 4.249 5 C 0.088 3.912 6 F -0.125 7.125 7 C -0.086 4.086 8 O -0.298 6.298 9 C 0.061 3.939 10 C -0.530 4.530 11 H 0.110 0.890 12 C -0.213 4.213 13 N -0.421 5.421 14 Si 0.933 3.067 15 H -0.200 1.200 16 H -0.182 1.182 17 H -0.180 1.180 18 C -0.192 4.192 19 H 0.160 0.840 20 H 0.238 0.762 21 H 0.102 0.898 22 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.618 0.283 -3.066 3.479 hybrid contribution 0.800 2.125 0.285 2.288 sum 2.418 2.408 -2.782 4.402 Atomic orbital electron populations 1.81119 1.12495 1.09498 1.10597 1.25841 0.92668 0.91929 0.92202 1.15465 0.83143 0.95436 1.04241 1.20210 0.91212 0.99338 1.14184 1.17661 0.90133 0.82001 1.01374 1.91389 1.81269 1.51200 1.88644 1.18704 0.83234 0.94278 1.12397 1.84713 1.15548 1.88884 1.40705 1.17837 0.91524 0.93637 0.90867 1.20753 1.03664 0.92349 1.36206 0.88973 1.28532 0.91794 1.03310 0.97636 1.70620 1.22882 1.38019 1.10605 0.82995 0.77467 0.71811 0.74471 1.20045 1.18197 1.18039 1.21135 0.93637 0.97363 1.07043 0.84015 0.76151 0.89820 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.63 18.54 19.00 0.35 -18.28 14 2 C 0.29 11.32 15.31 88.33 1.35 12.67 14 3 C 0.02 0.85 5.73 -21.36 -0.12 0.72 14 4 C -0.23 -8.67 9.71 22.71 0.22 -8.45 14 5 C 0.11 4.40 7.28 22.36 0.16 4.56 14 6 F -0.15 -5.67 17.09 44.97 0.77 -4.90 14 7 C -0.04 -1.68 6.75 23.17 0.16 -1.52 14 8 O -0.49 -19.78 12.63 -88.83 -1.12 -20.90 14 9 C 0.07 3.01 5.31 -21.24 -0.11 2.90 14 10 C -0.50 -23.31 8.64 23.41 0.20 -23.11 14 11 H 0.09 4.09 7.71 -2.91 -0.02 4.07 14 12 C 0.01 0.27 4.93 85.24 0.42 0.69 14 13 N -0.80 -38.70 12.31 21.82 0.27 -38.43 14 14 Si 1.12 37.65 30.00 68.60 2.06 39.71 14 15 H -0.28 -9.45 7.11 99.48 0.71 -8.74 14 16 H -0.26 -8.09 7.11 99.48 0.71 -7.38 14 17 H -0.26 -7.96 7.11 99.48 0.71 -7.25 14 18 C -0.17 -7.53 7.63 22.99 0.18 -7.36 14 19 H 0.14 4.68 8.06 -2.91 -0.02 4.66 14 20 H 0.38 11.70 9.06 -74.06 -0.67 11.03 14 21 H 0.29 14.50 6.68 -92.71 -0.62 13.88 14 22 H 0.11 5.26 6.48 -2.91 -0.02 5.24 14 Total: -1.00 -51.73 221.18 5.55 -46.18 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.77 Total: 15.51 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 2.46 Total: -18.89 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.62 Total: -56.71 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -1.12 Total: -20.90 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.77 Total: -4.90 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.06 Total: 39.71 kcal Total: -51.73 5.55 -46.18 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650424.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.755 kcal (2) G-P(sol) polarization free energy of solvation -51.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds