Wall clock time and date at job start Mon Mar 30 2020 02:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39292 * 120.53499 * 40.26947 * 3 2 1 5 5 C 1.38513 * 120.16305 * 179.69524 * 4 3 2 6 6 F 1.35098 * 119.33507 * 180.28171 * 5 4 3 7 7 C 1.38680 * 121.32690 * 0.60830 * 5 4 3 8 8 C 1.38076 * 121.09861 * 359.67344 * 7 5 4 9 9 O 1.35625 * 120.13229 * 180.02562 * 8 7 5 10 10 C 1.41532 * 119.72489 * 0.02562 * 8 7 5 11 11 C 1.40424 * 120.62380 * 179.97438 * 10 8 7 12 12 H 1.08006 * 120.00119 * 315.81822 * 11 10 8 13 13 C 1.40265 * 119.99932 * 135.81316 * 11 10 8 14 14 N 1.30688 * 119.99780 * 153.83681 * 13 11 10 15 15 Si 1.86801 * 119.99861 * 333.83671 * 13 11 10 16 16 H 1.48496 * 109.47185 * 94.66277 * 15 13 11 17 17 H 1.48501 * 109.46932 * 214.66109 * 15 13 11 18 18 H 1.48499 * 109.47248 * 334.65991 * 15 13 11 19 19 H 1.08000 * 119.92120 * 359.97438 * 4 3 2 20 20 H 1.08001 * 119.45306 * 179.69256 * 7 5 4 21 21 H 0.96706 * 113.99397 * 274.02541 * 9 8 7 22 22 H 0.97005 * 119.99500 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2762 -0.9145 -0.7755 5 6 4.6612 -0.9029 -0.7746 6 9 5.3311 -1.7942 -1.5374 7 6 5.3742 0.0009 -0.0012 8 6 4.7267 0.9275 0.7917 9 8 5.4435 1.8026 1.5399 10 6 3.3121 0.9601 0.8205 11 6 2.6342 1.8941 1.6205 12 1 2.9613 2.0755 2.6338 13 6 1.5325 2.5916 1.1037 14 7 0.6092 3.0447 1.9101 15 14 1.3850 2.8728 -0.7371 16 1 0.5476 1.8025 -1.3358 17 1 0.7534 4.1934 -0.9870 18 1 2.7365 2.8462 -1.3518 19 1 2.7440 -1.6319 -1.3825 20 1 6.4539 -0.0201 -0.0197 21 1 5.7044 1.4586 2.4053 22 1 -0.1529 3.5268 1.5526 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575650688.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:20 Heat of formation + Delta-G solvation = -56.874032 kcal Electronic energy + Delta-G solvation = -12789.930529 eV Core-core repulsion = 10224.073734 eV Total energy + Delta-G solvation = -2565.856795 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.45442 -40.15023 -37.92774 -36.42718 -35.65118 -32.19609 -31.06603 -27.08279 -24.76586 -22.73255 -20.32021 -19.70723 -17.87042 -17.58645 -17.08939 -16.76166 -16.20477 -15.69797 -15.15969 -15.15022 -14.85522 -14.39314 -13.94460 -13.70212 -13.56755 -12.82759 -12.54386 -12.33280 -12.10025 -11.77328 -11.48537 -11.04277 -9.64653 -9.36078 -9.14657 -6.63857 -0.02638 0.41450 1.18505 1.21479 1.34704 1.87075 1.96581 2.03941 2.43563 3.06451 3.17426 3.63402 3.98117 4.15973 4.35127 4.58085 4.92618 5.10859 5.27540 5.33764 5.59357 5.93508 6.09499 6.33440 6.49589 6.77146 7.21026 7.88252 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.033092 B = 0.015349 C = 0.012297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.929922 B = 1823.833383 C = 2276.500095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.291 3.709 3 C -0.152 4.152 4 C -0.058 4.058 5 C -0.009 4.009 6 F -0.152 7.152 7 C -0.111 4.111 8 C 0.048 3.952 9 O -0.490 6.490 10 C 0.083 3.917 11 C -0.447 4.447 12 H 0.090 0.910 13 C 0.069 3.931 14 N -0.801 5.801 15 Si 0.903 3.097 16 H -0.253 1.253 17 H -0.265 1.265 18 H -0.239 1.239 19 H 0.143 0.857 20 H 0.152 0.848 21 H 0.395 0.605 22 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.801 -3.430 -3.182 9.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.020 4.020 3 C -0.158 4.158 4 C -0.079 4.079 5 C -0.029 4.029 6 F -0.131 7.131 7 C -0.131 4.131 8 C 0.002 3.998 9 O -0.300 6.300 10 C 0.077 3.923 11 C -0.475 4.475 12 H 0.108 0.892 13 C -0.152 4.152 14 N -0.424 5.424 15 Si 0.724 3.276 16 H -0.178 1.178 17 H -0.190 1.190 18 H -0.162 1.162 19 H 0.161 0.839 20 H 0.170 0.830 21 H 0.251 0.749 22 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.758 -2.932 -3.573 7.384 hybrid contribution 0.084 -0.007 -0.029 0.089 sum 5.842 -2.939 -3.602 7.466 Atomic orbital electron populations 1.81047 1.13145 1.11275 1.11755 1.25478 0.92862 0.91814 0.91810 1.16718 0.83334 1.03387 1.12354 1.20779 0.92512 0.97206 0.97391 1.16669 0.88901 0.95837 1.01486 1.91397 1.80488 1.66740 1.74491 1.21239 1.01272 0.93268 0.97282 1.18192 0.87893 0.94186 0.99571 1.84719 1.72029 1.40770 1.32489 1.18991 0.91816 0.91196 0.90259 1.19258 1.08757 1.18674 1.00789 0.89194 1.26622 0.92413 0.93299 1.02915 1.69676 1.06757 1.25859 1.40075 0.86454 0.81585 0.79595 0.79973 1.17782 1.18964 1.16195 0.83907 0.82991 0.74870 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -24.18 17.39 19.01 0.33 -23.85 14 2 C 0.29 13.51 10.46 88.33 0.92 14.43 14 3 C -0.15 -6.48 4.87 -19.61 -0.10 -6.58 14 4 C -0.06 -2.09 9.72 22.59 0.22 -1.87 14 5 C -0.01 -0.30 7.27 22.44 0.16 -0.14 14 6 F -0.15 -4.92 17.24 44.97 0.78 -4.15 14 7 C -0.11 -3.68 9.87 22.34 0.22 -3.46 14 8 C 0.05 1.81 6.73 23.04 0.16 1.96 14 9 O -0.49 -16.89 12.97 -89.37 -1.16 -18.05 14 10 C 0.08 3.69 4.73 -19.77 -0.09 3.59 14 11 C -0.45 -22.18 8.75 23.30 0.20 -21.97 14 12 H 0.09 4.62 8.06 -2.91 -0.02 4.60 14 13 C 0.07 3.49 4.47 85.36 0.38 3.87 14 14 N -0.80 -41.83 13.92 21.88 0.30 -41.52 14 15 Si 0.90 40.72 24.86 68.60 1.71 42.42 14 16 H -0.25 -11.71 5.37 99.48 0.53 -11.18 14 17 H -0.26 -11.32 7.11 99.48 0.71 -10.61 14 18 H -0.24 -10.55 7.11 99.48 0.71 -9.84 14 19 H 0.14 4.47 8.06 -2.91 -0.02 4.44 14 20 H 0.15 4.10 8.06 -2.91 -0.02 4.08 14 21 H 0.39 9.58 9.06 -74.05 -0.67 8.91 14 22 H 0.30 14.35 8.29 -92.70 -0.77 13.58 14 Total: -1.00 -55.78 214.36 4.47 -51.31 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 0.44 Total: 3.99 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 2.08 Total: -10.15 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: 0.64 Total: -65.37 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -1.16 Total: -18.05 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.78 Total: -4.15 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.71 Total: 42.42 kcal Total: -55.78 4.47 -51.31 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650688.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.566 kcal (2) G-P(sol) polarization free energy of solvation -55.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds