Wall clock time and date at job start Mon Mar 30 2020 02:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47118 * 180.99014 * 3 2 1 5 5 O 1.42907 * 109.47189 * 60.99613 * 3 2 1 6 6 C 1.50699 * 109.47509 * 300.99171 * 3 2 1 7 7 C 1.39659 * 125.68551 * 65.02014 * 6 3 2 8 8 C 1.39377 * 107.57936 * 179.97438 * 7 6 3 9 9 C 1.39939 * 126.44189 * 180.02562 * 8 7 6 10 10 H 1.07993 * 119.99801 * 359.97182 * 9 8 7 11 11 C 1.40422 * 119.99869 * 179.97438 * 9 8 7 12 12 N 1.30585 * 120.00056 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00054 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47162 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.46948 * 120.00037 * 13 11 9 16 16 H 1.48492 * 109.47208 * 239.99880 * 13 11 9 17 17 O 1.35126 * 107.11411 * 359.97438 * 8 7 6 18 18 N 1.30581 * 125.68491 * 244.97640 * 6 3 2 19 19 H 4.44648 * 5.63260 * 180.02562 * 4 1 2 20 20 H 1.08995 * 109.47617 * 180.02562 * 4 3 2 21 21 H 1.09005 * 109.47020 * 300.00199 * 4 3 2 22 22 H 1.08999 * 109.47097 * 59.99856 * 4 3 2 23 23 H 0.96700 * 113.99604 * 299.99181 * 5 3 2 24 24 H 1.08008 * 126.21040 * 359.95902 * 7 6 3 25 25 H 0.97002 * 119.99665 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4432 0.0249 5 8 3.1226 -0.6524 -1.1784 6 6 3.1487 -0.7307 1.2179 7 6 2.9693 -2.0900 1.4838 8 6 3.5841 -2.3649 2.7041 9 6 3.6421 -3.6080 3.3442 10 1 3.1800 -4.4716 2.8894 11 6 4.3012 -3.7323 4.5778 12 7 4.8604 -2.6881 5.1275 13 14 4.3794 -5.3918 5.4320 14 1 3.6746 -6.4064 4.6079 15 1 5.7987 -5.7931 5.6050 16 1 3.7267 -5.2951 6.7622 17 8 4.1145 -1.2057 3.1523 18 7 3.8254 -0.1993 2.2002 19 1 -1.0502 -0.0005 0.0002 20 1 4.2453 1.4438 0.0245 21 1 2.7917 1.9722 -0.8561 22 1 2.7918 1.9414 0.9236 23 1 2.8378 -1.5729 -1.2604 24 1 2.4485 -2.7993 0.8576 25 1 5.3154 -2.7740 5.9799 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584645013.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:00 Heat of formation + Delta-G solvation = 31.876639 kcal Electronic energy + Delta-G solvation = -12881.259568 eV Core-core repulsion = 10442.711596 eV Total energy + Delta-G solvation = -2438.547972 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.69751 -37.42841 -34.01224 -32.93069 -31.54679 -29.84710 -29.16183 -25.65599 -23.82999 -20.36396 -19.84609 -18.49526 -17.80471 -15.76911 -15.41774 -14.82789 -14.23393 -13.76204 -13.65063 -13.06752 -12.23686 -12.14402 -11.82048 -11.69289 -11.49597 -11.27451 -10.78954 -10.41558 -10.35749 -10.27896 -9.83519 -9.77457 -9.41063 -9.05888 -7.66624 -7.12311 -4.95988 2.66469 2.88794 2.90963 2.97955 3.05055 3.28133 3.67981 3.83828 4.38679 4.75458 4.81989 5.02300 5.45554 5.61613 5.94209 6.14864 6.29951 6.48782 6.72785 6.75046 7.11479 7.17746 7.60994 7.84097 7.87660 7.96934 8.26365 8.40423 9.23668 9.84628 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.056125 B = 0.008313 C = 0.007890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.765606 B = 3367.359195 C = 3547.776958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.191 4.191 3 C 0.320 3.680 4 C -0.123 4.123 5 O -0.542 6.542 6 C 0.085 3.915 7 C -0.456 4.456 8 C 0.236 3.764 9 C -0.425 4.425 10 H 0.107 0.893 11 C 0.066 3.934 12 N -0.749 5.749 13 Si 0.930 3.070 14 H -0.255 1.255 15 H -0.267 1.267 16 H -0.268 1.268 17 O -0.075 6.075 18 N -0.422 5.422 19 H 0.219 0.781 20 H 0.075 0.925 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.383 0.617 24 H 0.114 0.886 25 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.172 -0.433 -4.249 5.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.192 4.192 3 C 0.278 3.722 4 C -0.181 4.181 5 O -0.347 6.347 6 C -0.078 4.078 7 C -0.486 4.486 8 C 0.175 3.825 9 C -0.456 4.456 10 H 0.125 0.875 11 C -0.159 4.159 12 N -0.373 5.373 13 Si 0.753 3.247 14 H -0.178 1.178 15 H -0.192 1.192 16 H -0.193 1.193 17 O -0.082 6.082 18 N -0.178 5.178 19 H 0.235 0.765 20 H 0.094 0.906 21 H 0.080 0.920 22 H 0.096 0.904 23 H 0.231 0.769 24 H 0.132 0.868 25 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.185 1.396 -3.663 5.050 hybrid contribution -0.845 -2.070 0.219 2.246 sum -4.030 -0.674 -3.444 5.343 Atomic orbital electron populations 1.24847 0.95700 1.00396 0.99861 1.23612 0.94689 1.00445 1.00482 1.15971 0.81566 0.92951 0.81715 1.21619 1.02677 0.91495 1.02272 1.86552 1.76615 1.30259 1.41281 1.22513 0.95663 0.94595 0.94989 1.21547 1.27870 0.94684 1.04532 1.20157 0.85599 0.87170 0.89537 1.19108 1.30461 0.93172 1.02841 0.87461 1.26353 0.92766 0.99672 0.97141 1.69696 1.21071 1.31066 1.15450 0.85882 0.79326 0.80208 0.79307 1.17832 1.19231 1.19270 1.89363 1.65174 1.15185 1.38461 1.79909 1.26777 1.08765 1.02376 0.76457 0.90612 0.91983 0.90442 0.76890 0.86757 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 19.25 29.55 0.57 -2.46 15 2 C -0.19 -3.61 12.02 -37.12 -0.45 -4.06 15 3 C 0.32 6.52 1.22 -94.56 -0.12 6.41 15 4 C -0.12 -2.26 8.27 37.16 0.31 -1.95 15 5 O -0.54 -10.19 12.94 -35.23 -0.46 -10.64 15 6 C 0.08 2.11 5.81 -82.59 -0.48 1.63 15 7 C -0.46 -11.79 10.39 -38.63 -0.40 -12.19 15 8 C 0.24 6.66 6.88 -38.52 -0.27 6.39 15 9 C -0.43 -11.09 9.35 -38.12 -0.36 -11.45 15 10 H 0.11 2.56 7.85 -52.49 -0.41 2.14 15 11 C 0.07 1.61 5.50 -17.26 -0.09 1.52 15 12 N -0.75 -19.47 12.03 55.57 0.67 -18.81 15 13 Si 0.93 17.47 29.56 -169.99 -5.03 12.45 15 14 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 15 H -0.27 -4.92 7.11 56.52 0.40 -4.51 15 16 H -0.27 -4.92 7.11 56.52 0.40 -4.52 15 17 O -0.08 -2.26 10.49 6.72 0.07 -2.19 15 18 N -0.42 -11.68 12.19 33.59 0.41 -11.27 15 19 H 0.22 2.41 7.80 -54.08 -0.42 1.99 15 20 H 0.07 1.41 8.14 -51.93 -0.42 0.99 15 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 22 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 23 H 0.38 6.11 8.77 45.56 0.40 6.51 15 24 H 0.11 2.68 8.06 -52.48 -0.42 2.26 15 25 H 0.29 6.68 8.29 -40.82 -0.34 6.34 15 LS Contribution 242.43 15.07 3.65 3.65 Total: -1.00 -31.23 242.43 -3.22 -34.46 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -1.26 Total: 8.50 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -1.28 Total: -16.15 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 1.08 Total: -30.08 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.39 Total: -12.83 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.23 -3.22 -34.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584645013.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.333 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds