Wall clock time and date at job start Mon Mar 30 2020 02:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47118 * 180.99014 * 3 2 1 5 5 O 1.42907 * 109.47189 * 60.99613 * 3 2 1 6 6 C 1.50699 * 109.47509 * 300.99171 * 3 2 1 7 7 C 1.39659 * 125.68551 * 65.02014 * 6 3 2 8 8 C 1.39377 * 107.57936 * 179.97438 * 7 6 3 9 9 C 1.39939 * 126.44189 * 180.02562 * 8 7 6 10 10 H 1.07993 * 119.99801 * 359.97182 * 9 8 7 11 11 C 1.40422 * 119.99869 * 179.97438 * 9 8 7 12 12 N 1.30585 * 120.00056 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00054 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47162 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.46948 * 120.00037 * 13 11 9 16 16 H 1.48492 * 109.47208 * 239.99880 * 13 11 9 17 17 O 1.35126 * 107.11411 * 359.97438 * 8 7 6 18 18 N 1.30581 * 125.68491 * 244.97640 * 6 3 2 19 19 H 4.44648 * 5.63260 * 180.02562 * 4 1 2 20 20 H 1.08995 * 109.47617 * 180.02562 * 4 3 2 21 21 H 1.09005 * 109.47020 * 300.00199 * 4 3 2 22 22 H 1.08999 * 109.47097 * 59.99856 * 4 3 2 23 23 H 0.96700 * 113.99604 * 299.99181 * 5 3 2 24 24 H 1.08008 * 126.21040 * 359.95902 * 7 6 3 25 25 H 0.97002 * 119.99665 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4432 0.0249 5 8 3.1226 -0.6524 -1.1784 6 6 3.1487 -0.7307 1.2179 7 6 2.9693 -2.0900 1.4838 8 6 3.5841 -2.3649 2.7041 9 6 3.6421 -3.6080 3.3442 10 1 3.1800 -4.4716 2.8894 11 6 4.3012 -3.7323 4.5778 12 7 4.8604 -2.6881 5.1275 13 14 4.3794 -5.3918 5.4320 14 1 3.6746 -6.4064 4.6079 15 1 5.7987 -5.7931 5.6050 16 1 3.7267 -5.2951 6.7622 17 8 4.1145 -1.2057 3.1523 18 7 3.8254 -0.1993 2.2002 19 1 -1.0502 -0.0005 0.0002 20 1 4.2453 1.4438 0.0245 21 1 2.7917 1.9722 -0.8561 22 1 2.7918 1.9414 0.9236 23 1 2.8378 -1.5729 -1.2604 24 1 2.4485 -2.7993 0.8576 25 1 5.3154 -2.7740 5.9799 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584645013.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:00 Heat of formation + Delta-G solvation = 8.636864 kcal Electronic energy + Delta-G solvation = -12882.267320 eV Core-core repulsion = 10442.711596 eV Total energy + Delta-G solvation = -2439.555724 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.66362 -39.01431 -35.92405 -34.45472 -33.25475 -31.76850 -30.84690 -27.63899 -25.42240 -22.29040 -21.65272 -19.97897 -19.67633 -17.39832 -17.09799 -16.48927 -16.02546 -15.59930 -15.43561 -14.80963 -14.02129 -13.74086 -13.37006 -13.26178 -13.07753 -12.93663 -12.59656 -11.95227 -11.85723 -11.62370 -11.56135 -11.51032 -11.21688 -11.05513 -9.73009 -8.98034 -6.99281 0.85585 1.36329 1.38531 1.58289 1.70084 1.72039 2.03958 2.10189 2.66782 3.00521 3.20987 3.43761 3.75375 4.01004 4.55166 4.69263 4.79689 4.86987 4.97806 5.08954 5.14447 5.22481 5.66844 6.00958 6.30803 6.39629 6.49874 6.55355 7.19160 8.02593 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.056125 B = 0.008313 C = 0.007890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.765606 B = 3367.359195 C = 3547.776958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.258 4.258 3 C 0.321 3.679 4 C -0.121 4.121 5 O -0.543 6.543 6 C 0.091 3.909 7 C -0.470 4.470 8 C 0.197 3.803 9 C -0.442 4.442 10 H 0.126 0.874 11 C 0.019 3.981 12 N -0.790 5.790 13 Si 1.018 2.982 14 H -0.241 1.241 15 H -0.259 1.259 16 H -0.259 1.259 17 O -0.118 6.118 18 N -0.451 5.451 19 H 0.265 0.735 20 H 0.063 0.937 21 H 0.091 0.909 22 H 0.070 0.930 23 H 0.393 0.607 24 H 0.133 0.867 25 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 -1.837 -4.486 7.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.259 4.259 3 C 0.279 3.721 4 C -0.178 4.178 5 O -0.350 6.350 6 C -0.071 4.071 7 C -0.500 4.500 8 C 0.137 3.863 9 C -0.471 4.471 10 H 0.144 0.856 11 C -0.202 4.202 12 N -0.414 5.414 13 Si 0.835 3.165 14 H -0.164 1.164 15 H -0.183 1.183 16 H -0.183 1.183 17 O -0.122 6.122 18 N -0.212 5.212 19 H 0.281 0.719 20 H 0.082 0.918 21 H 0.110 0.890 22 H 0.089 0.911 23 H 0.243 0.757 24 H 0.151 0.849 25 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.638 -0.015 -3.911 6.067 hybrid contribution -0.455 -1.621 0.264 1.705 sum -5.094 -1.636 -3.646 6.474 Atomic orbital electron populations 1.25904 0.96469 0.96931 0.96284 1.23527 0.94870 1.03710 1.03772 1.15960 0.83167 0.93065 0.79939 1.21608 1.01889 0.90928 1.03349 1.86525 1.76926 1.31179 1.40324 1.23265 0.93604 0.94676 0.95585 1.21819 1.28274 0.95606 1.04314 1.20865 0.86722 0.87688 0.91004 1.19711 1.30544 0.93019 1.03846 0.85638 1.27597 0.91223 1.04306 0.97100 1.69778 1.21268 1.34041 1.16353 0.84623 0.79827 0.74081 0.78000 1.16402 1.18304 1.18286 1.89292 1.66523 1.16236 1.40144 1.79836 1.29099 1.08862 1.03434 0.71872 0.91836 0.89013 0.91095 0.75690 0.84919 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 19.25 74.32 1.43 -2.51 15 2 C -0.26 -9.31 12.02 31.13 0.37 -8.93 15 3 C 0.32 13.01 1.22 -13.35 -0.02 12.99 15 4 C -0.12 -4.41 8.27 71.98 0.60 -3.81 15 5 O -0.54 -20.11 12.94 -148.98 -1.93 -22.04 15 6 C 0.09 4.61 5.81 43.09 0.25 4.86 15 7 C -0.47 -24.74 10.39 22.89 0.24 -24.50 15 8 C 0.20 11.43 6.88 22.96 0.16 11.59 15 9 C -0.44 -23.19 9.35 23.21 0.22 -22.97 15 10 H 0.13 5.89 7.85 -2.91 -0.02 5.87 15 11 C 0.02 0.94 5.50 85.41 0.47 1.41 15 12 N -0.79 -41.77 12.03 21.91 0.26 -41.50 15 13 Si 1.02 34.55 29.56 68.60 2.03 36.57 15 14 H -0.24 -7.60 7.11 99.48 0.71 -6.90 15 15 H -0.26 -8.39 7.11 99.48 0.71 -7.68 15 16 H -0.26 -8.36 7.11 99.48 0.71 -7.65 15 17 O -0.12 -7.42 10.49 26.34 0.28 -7.14 15 18 N -0.45 -25.99 12.19 -47.64 -0.58 -26.57 15 19 H 0.27 4.42 7.80 -4.41 -0.03 4.39 15 20 H 0.06 2.41 8.14 -2.39 -0.02 2.39 15 21 H 0.09 2.73 8.14 -2.38 -0.02 2.71 15 22 H 0.07 2.63 8.14 -2.39 -0.02 2.61 15 23 H 0.39 12.31 8.77 -74.06 -0.65 11.66 15 24 H 0.13 6.23 8.06 -2.91 -0.02 6.20 15 25 H 0.30 14.02 8.29 -92.71 -0.77 13.26 15 Total: -1.00 -70.01 242.43 4.34 -65.67 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.56 Total: 26.87 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 3.72 Total: -31.87 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -0.32 Total: -68.07 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.65 Total: -29.18 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.57 kcal Total: -70.01 4.34 -65.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584645013.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.308 kcal (2) G-P(sol) polarization free energy of solvation -70.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds