Wall clock time and date at job start Mon Mar 30 2020 02:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31801 * 120.14523 * 2 1 4 4 N 1.28306 * 122.26602 * 179.97438 * 3 2 1 5 5 C 1.32061 * 122.40508 * 0.02562 * 4 3 2 6 6 C 1.38293 * 119.94134 * 0.02562 * 5 4 3 7 7 C 1.39444 * 120.14205 * 179.72772 * 2 1 3 8 8 N 1.39285 * 121.10753 * 0.02562 * 7 2 1 9 9 C 1.34772 * 120.00507 * 204.16747 * 8 7 2 10 10 O 1.21719 * 119.99821 * 5.64579 * 9 8 7 11 11 C 1.46230 * 120.00177 * 185.65704 * 9 8 7 12 12 H 1.07993 * 119.99783 * 359.97438 * 11 9 8 13 13 C 1.40116 * 119.99603 * 179.97438 * 11 9 8 14 14 N 1.30640 * 120.00313 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99455 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47391 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47150 * 119.99984 * 15 13 11 18 18 H 1.48502 * 109.47153 * 239.99648 * 15 13 11 19 19 H 1.09000 * 109.47270 * 90.00029 * 1 2 3 20 20 H 1.08999 * 109.47193 * 329.99773 * 1 2 3 21 21 H 1.09000 * 109.47110 * 209.99281 * 1 2 3 22 22 H 1.07999 * 120.03344 * 179.97438 * 5 4 3 23 23 H 1.07996 * 121.05741 * 179.97438 * 6 5 4 24 24 H 0.97002 * 119.99630 * 24.15556 * 8 7 2 25 25 H 0.97003 * 119.99509 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1689 1.1398 0.0000 4 7 3.4511 1.1872 0.0005 5 6 4.1996 0.0992 0.0005 6 6 3.6035 -1.1486 -0.0005 7 6 2.2072 -1.2059 0.0057 8 7 1.5373 -2.4270 0.0110 9 6 2.1465 -3.5279 0.4940 10 8 3.2408 -3.4369 1.0192 11 6 1.4929 -4.8316 0.3870 12 1 0.5219 -4.9122 -0.0787 13 6 2.1266 -5.9761 0.8888 14 7 3.3015 -5.8786 1.4517 15 14 1.2914 -7.6415 0.7527 16 1 -0.0221 -7.4829 0.0784 17 1 2.1466 -8.5608 -0.0403 18 1 1.0861 -8.2048 2.1113 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 0.8899 0.5139 21 1 -0.3633 -0.8900 0.5137 22 1 5.2763 0.1838 0.0005 23 1 4.1982 -2.0501 -0.0009 24 1 0.6321 -2.4850 -0.3329 25 1 3.7399 -6.6710 1.7994 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606253709.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:32 Heat of formation + Delta-G solvation = 10.385429 kcal Electronic energy + Delta-G solvation = -12954.466841 eV Core-core repulsion = 10547.279692 eV Total energy + Delta-G solvation = -2407.187150 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.52859 -37.93330 -34.52979 -33.02660 -32.49603 -30.77719 -27.83576 -26.63583 -23.66839 -22.35144 -20.32180 -18.36094 -16.64268 -16.43708 -15.59518 -15.04266 -14.73257 -14.06534 -13.75300 -12.98203 -12.83359 -12.60942 -12.56783 -12.10514 -11.50037 -11.30486 -10.88206 -10.46439 -10.44531 -10.13351 -9.33653 -9.28417 -9.13570 -7.99483 -7.61432 -6.55517 -5.04907 1.51468 1.57400 2.94915 3.03746 3.08208 3.80288 4.03909 4.21143 4.32987 4.60373 4.98852 5.18405 5.39825 5.55259 5.71264 5.75376 5.89515 6.18499 6.32525 6.59702 6.89853 7.09713 7.38393 7.61140 7.88973 8.63590 8.87407 9.35317 10.08728 10.33243 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.059390 B = 0.008574 C = 0.007615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.345621 B = 3264.908261 C = 3676.006736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.009 3.991 3 N -0.234 5.234 4 N -0.293 5.293 5 C 0.050 3.950 6 C -0.156 4.156 7 C 0.193 3.807 8 N -0.676 5.676 9 C 0.535 3.465 10 O -0.554 6.554 11 C -0.532 4.532 12 H 0.076 0.924 13 C 0.085 3.915 14 N -0.754 5.754 15 Si 0.917 3.083 16 H -0.261 1.261 17 H -0.273 1.273 18 H -0.273 1.273 19 H 0.075 0.925 20 H 0.078 0.922 21 H 0.073 0.927 22 H 0.163 0.837 23 H 0.170 0.830 24 H 0.400 0.600 25 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 3.065 -3.226 6.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.141 4.141 3 N -0.077 5.077 4 N -0.138 5.138 5 C -0.111 4.111 6 C -0.188 4.188 7 C 0.080 3.920 8 N -0.318 5.318 9 C 0.343 3.657 10 O -0.436 6.436 11 C -0.567 4.567 12 H 0.095 0.905 13 C -0.137 4.137 14 N -0.382 5.382 15 Si 0.741 3.259 16 H -0.185 1.185 17 H -0.198 1.198 18 H -0.198 1.198 19 H 0.094 0.906 20 H 0.097 0.903 21 H 0.092 0.908 22 H 0.180 0.820 23 H 0.187 0.813 24 H 0.235 0.765 25 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.380 4.531 -2.745 6.284 hybrid contribution -0.647 -2.508 -0.155 2.594 sum -4.027 2.024 -2.900 5.359 Atomic orbital electron populations 1.20509 0.88293 1.03600 1.02796 1.22604 0.98458 0.89511 1.03533 1.72613 1.02284 1.23955 1.08831 1.72749 0.99067 1.27561 1.14437 1.24017 1.01809 0.89512 0.95778 1.22717 0.94225 1.00717 1.01179 1.18875 0.92897 0.87602 0.92664 1.44291 1.18307 1.06288 1.62921 1.18562 0.85942 0.82789 0.78420 1.90599 1.21563 1.84727 1.46692 1.20909 1.05604 0.89680 1.40526 0.90545 1.25778 0.94317 1.00811 0.92807 1.69974 1.12047 1.30598 1.25540 0.86150 0.80073 0.80915 0.78794 1.18485 1.19822 1.19827 0.90639 0.90271 0.90772 0.81977 0.81282 0.76535 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 9.69 36.01 0.35 -0.94 15 2 C 0.01 0.17 6.89 -82.16 -0.57 -0.40 15 3 N -0.23 -4.61 11.42 33.74 0.39 -4.22 15 4 N -0.29 -5.82 11.50 30.51 0.35 -5.47 15 5 C 0.05 0.93 11.30 -17.43 -0.20 0.74 15 6 C -0.16 -3.26 8.87 -39.00 -0.35 -3.61 15 7 C 0.19 3.96 6.46 -83.46 -0.54 3.42 15 8 N -0.68 -14.15 5.00 -10.97 -0.05 -14.20 15 9 C 0.53 13.84 7.57 -13.05 -0.10 13.74 15 10 O -0.55 -16.16 12.25 5.17 0.06 -16.10 15 11 C -0.53 -13.54 9.54 -35.67 -0.34 -13.88 15 12 H 0.08 1.75 7.85 -52.49 -0.41 1.34 15 13 C 0.09 2.16 5.50 -17.35 -0.10 2.06 15 14 N -0.75 -20.68 11.83 55.55 0.66 -20.03 15 15 Si 0.92 18.34 29.56 -169.99 -5.02 13.32 15 16 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 19 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 20 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.07 0.97 7.06 -51.93 -0.37 0.60 15 22 H 0.16 2.40 8.06 -52.49 -0.42 1.98 15 23 H 0.17 3.89 5.96 -52.49 -0.31 3.57 15 24 H 0.40 6.97 7.48 -40.82 -0.31 6.66 15 25 H 0.27 6.80 8.29 -40.82 -0.34 6.46 15 LS Contribution 229.67 15.07 3.46 3.46 Total: -1.00 -31.26 229.67 -3.79 -35.06 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -1.80 Total: 7.04 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.83 Total: 1.14 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 1.34 Total: -43.92 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.06 Total: -16.10 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.02 Total: 13.32 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -31.26 -3.79 -35.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606253709.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.443 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds