Wall clock time and date at job start Mon Mar 30 2020 02:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31801 * 120.14523 * 2 1 4 4 N 1.28306 * 122.26602 * 179.97438 * 3 2 1 5 5 C 1.32061 * 122.40508 * 0.02562 * 4 3 2 6 6 C 1.38293 * 119.94134 * 0.02562 * 5 4 3 7 7 C 1.39444 * 120.14205 * 179.72772 * 2 1 3 8 8 N 1.39285 * 121.10753 * 0.02562 * 7 2 1 9 9 C 1.34772 * 120.00507 * 204.16747 * 8 7 2 10 10 O 1.21719 * 119.99821 * 5.64579 * 9 8 7 11 11 C 1.46230 * 120.00177 * 185.65704 * 9 8 7 12 12 H 1.07993 * 119.99783 * 359.97438 * 11 9 8 13 13 C 1.40116 * 119.99603 * 179.97438 * 11 9 8 14 14 N 1.30640 * 120.00313 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99455 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47391 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47150 * 119.99984 * 15 13 11 18 18 H 1.48502 * 109.47153 * 239.99648 * 15 13 11 19 19 H 1.09000 * 109.47270 * 90.00029 * 1 2 3 20 20 H 1.08999 * 109.47193 * 329.99773 * 1 2 3 21 21 H 1.09000 * 109.47110 * 209.99281 * 1 2 3 22 22 H 1.07999 * 120.03344 * 179.97438 * 5 4 3 23 23 H 1.07996 * 121.05741 * 179.97438 * 6 5 4 24 24 H 0.97002 * 119.99630 * 24.15556 * 8 7 2 25 25 H 0.97003 * 119.99509 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1689 1.1398 0.0000 4 7 3.4511 1.1872 0.0005 5 6 4.1996 0.0992 0.0005 6 6 3.6035 -1.1486 -0.0005 7 6 2.2072 -1.2059 0.0057 8 7 1.5373 -2.4270 0.0110 9 6 2.1465 -3.5279 0.4940 10 8 3.2408 -3.4369 1.0192 11 6 1.4929 -4.8316 0.3870 12 1 0.5219 -4.9122 -0.0787 13 6 2.1266 -5.9761 0.8888 14 7 3.3015 -5.8786 1.4517 15 14 1.2914 -7.6415 0.7527 16 1 -0.0221 -7.4829 0.0784 17 1 2.1466 -8.5608 -0.0403 18 1 1.0861 -8.2048 2.1113 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 0.8899 0.5139 21 1 -0.3633 -0.8900 0.5137 22 1 5.2763 0.1838 0.0005 23 1 4.1982 -2.0501 -0.0009 24 1 0.6321 -2.4850 -0.3329 25 1 3.7399 -6.6710 1.7994 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606253709.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:32 Heat of formation + Delta-G solvation = -12.534873 kcal Electronic energy + Delta-G solvation = -12955.460740 eV Core-core repulsion = 10547.279692 eV Total energy + Delta-G solvation = -2408.181048 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.09646 -39.76331 -36.27097 -34.81240 -34.15559 -32.42985 -29.24303 -28.47183 -25.33297 -23.81600 -22.14792 -20.09960 -18.30791 -18.18553 -17.35491 -16.61639 -16.27613 -15.72788 -15.28399 -14.83668 -14.59158 -14.10360 -13.75920 -13.27570 -13.25974 -12.90129 -12.80051 -12.11776 -12.00870 -11.70847 -11.03748 -10.92411 -10.77866 -9.92762 -9.32660 -8.44720 -7.03797 -0.05549 0.02087 1.38973 1.41469 1.59012 2.14952 2.26085 2.54945 2.69544 3.21730 3.43561 3.53292 3.74006 4.06031 4.36025 4.54742 4.73352 4.82579 4.99893 5.18884 5.21073 5.34723 5.62429 5.88913 6.04180 6.70433 7.10002 7.81545 8.16454 8.47385 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.059390 B = 0.008574 C = 0.007615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.345621 B = 3264.908261 C = 3676.006736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.022 3.978 3 N -0.248 5.248 4 N -0.304 5.304 5 C 0.060 3.940 6 C -0.175 4.175 7 C 0.173 3.827 8 N -0.665 5.665 9 C 0.523 3.477 10 O -0.598 6.598 11 C -0.554 4.554 12 H 0.100 0.900 13 C 0.031 3.969 14 N -0.808 5.808 15 Si 1.002 2.998 16 H -0.243 1.243 17 H -0.269 1.269 18 H -0.270 1.270 19 H 0.103 0.897 20 H 0.093 0.907 21 H 0.082 0.918 22 H 0.197 0.803 23 H 0.144 0.856 24 H 0.417 0.583 25 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.094 2.855 -3.835 7.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 N -0.090 5.090 4 N -0.147 5.147 5 C -0.102 4.102 6 C -0.207 4.207 7 C 0.060 3.940 8 N -0.309 5.309 9 C 0.331 3.669 10 O -0.483 6.483 11 C -0.589 4.589 12 H 0.118 0.882 13 C -0.186 4.186 14 N -0.436 5.436 15 Si 0.821 3.179 16 H -0.166 1.166 17 H -0.194 1.194 18 H -0.195 1.195 19 H 0.121 0.879 20 H 0.112 0.888 21 H 0.100 0.900 22 H 0.213 0.787 23 H 0.161 0.839 24 H 0.255 0.745 25 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.248 4.384 -3.380 7.628 hybrid contribution -0.059 -2.334 0.018 2.335 sum -5.307 2.049 -3.362 6.608 Atomic orbital electron populations 1.20696 0.84800 1.04724 1.04910 1.23173 1.00575 0.87969 1.01112 1.72601 1.02412 1.24459 1.09525 1.72718 0.99498 1.27955 1.14543 1.24394 1.03312 0.88129 0.94381 1.22637 0.94774 1.00751 1.02563 1.19106 0.93066 0.88154 0.93660 1.43810 1.18862 1.05524 1.62661 1.18901 0.85613 0.84220 0.78178 1.90573 1.23390 1.85738 1.48587 1.21459 1.06676 0.89952 1.40857 0.88168 1.26997 0.94655 1.05349 0.91595 1.70120 1.14194 1.32281 1.27024 0.84889 0.79362 0.74746 0.78925 1.16563 1.19435 1.19453 0.87869 0.88784 0.89960 0.78665 0.83880 0.74531 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.28 9.69 71.24 0.69 -1.59 15 2 C 0.02 0.78 6.89 42.85 0.30 1.08 15 3 N -0.25 -9.39 11.42 -47.18 -0.54 -9.93 15 4 N -0.30 -11.69 11.50 -57.39 -0.66 -12.35 15 5 C 0.06 2.19 11.30 84.67 0.96 3.15 15 6 C -0.17 -7.42 8.87 22.65 0.20 -7.22 15 7 C 0.17 7.02 6.46 38.61 0.25 7.27 15 8 N -0.67 -27.58 5.00 -306.83 -1.53 -29.11 15 9 C 0.52 27.44 7.57 86.32 0.65 28.09 15 10 O -0.60 -36.13 12.25 -4.41 -0.05 -36.18 15 11 C -0.55 -28.04 9.54 24.80 0.24 -27.80 15 12 H 0.10 4.41 7.85 -2.91 -0.02 4.38 15 13 C 0.03 1.58 5.50 85.33 0.47 2.05 15 14 N -0.81 -45.28 11.83 21.85 0.26 -45.02 15 15 Si 1.00 36.84 29.56 68.60 2.03 38.87 15 16 H -0.24 -8.13 7.11 99.48 0.71 -7.42 15 17 H -0.27 -9.67 7.11 99.48 0.71 -8.96 15 18 H -0.27 -9.68 7.11 99.48 0.71 -8.98 15 19 H 0.10 2.02 8.14 -2.39 -0.02 2.00 15 20 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 21 H 0.08 1.91 7.06 -2.39 -0.02 1.89 15 22 H 0.20 5.57 8.06 -2.91 -0.02 5.54 15 23 H 0.14 6.90 5.96 -2.91 -0.02 6.89 15 24 H 0.42 13.90 7.48 -92.71 -0.69 13.21 15 25 H 0.28 14.18 8.29 -92.71 -0.77 13.41 15 Total: -1.00 -68.46 229.67 3.79 -64.67 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.54 Total: 24.02 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 3.75 Total: 5.03 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -2.47 Total: -96.42 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.05 Total: -36.18 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Total: -68.46 3.79 -64.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606253709.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.137 kcal (2) G-P(sol) polarization free energy of solvation -68.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds