Wall clock time and date at job start Mon Mar 30 2020 02:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99976 * 2 1 4 4 C 1.36656 * 111.00218 * 123.95221 * 2 1 3 5 5 O 1.34555 * 126.65211 * 359.97438 * 4 2 1 6 6 C 1.35088 * 108.01696 * 179.97438 * 5 4 2 7 7 C 1.39531 * 125.30960 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.40194 * 120.00094 * 179.97438 * 7 6 5 10 10 N 1.30718 * 119.99958 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99674 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47502 * 89.99798 * 11 9 7 13 13 H 1.48505 * 109.46953 * 209.99600 * 11 9 7 14 14 H 1.48502 * 109.47350 * 329.99485 * 11 9 7 15 15 N 1.32564 * 109.38678 * 359.97438 * 6 5 4 16 16 C 1.34012 * 108.78548 * 359.97438 * 15 6 5 17 17 C 1.43200 * 126.44401 * 179.97438 * 16 15 6 18 18 N 3.62876 * 122.53029 * 358.82559 * 3 1 2 19 19 H 1.09000 * 109.46975 * 296.04760 * 1 2 3 20 20 H 1.08995 * 109.47535 * 56.04339 * 1 2 3 21 21 H 1.08992 * 109.47212 * 176.04683 * 1 2 3 22 22 H 1.08996 * 109.47315 * 183.95827 * 3 2 1 23 23 H 1.09000 * 109.46780 * 303.95389 * 3 2 1 24 24 H 1.08998 * 109.47310 * 63.95270 * 3 2 1 25 25 H 0.97003 * 119.99850 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9588 -0.7125 1.0583 5 8 1.2388 -1.3470 2.0015 6 6 2.1006 -1.9287 2.8640 7 6 1.7382 -2.6815 3.9815 8 1 0.6947 -2.8364 4.2130 9 6 2.7286 -3.2368 4.8038 10 7 3.9916 -3.0497 4.5234 11 14 2.2433 -4.2440 6.3003 12 1 2.1130 -5.6722 5.9148 13 1 3.2866 -4.1074 7.3484 14 1 0.9448 -3.7531 6.8276 15 7 3.3443 -1.6737 2.4825 16 6 3.3100 -0.9261 1.3708 17 6 4.4399 -0.4357 0.6404 18 7 5.3361 -0.0440 0.0627 19 1 -0.3633 0.4513 0.9233 20 1 -0.3634 0.5740 -0.8523 21 1 -0.3633 -1.0251 -0.0708 22 1 3.0827 1.3433 -0.0709 23 1 1.5898 1.9163 -0.8525 24 1 1.7044 1.8724 0.9233 25 1 4.6768 -3.4342 5.0922 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958719685.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:59 Heat of formation + Delta-G solvation = 55.200315 kcal Electronic energy + Delta-G solvation = -13040.349928 eV Core-core repulsion = 10635.106097 eV Total energy + Delta-G solvation = -2405.243830 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.41002 -37.01948 -35.73226 -33.99252 -32.77411 -29.12504 -27.50560 -26.15722 -24.05451 -21.87862 -20.30216 -18.09760 -16.93076 -16.13370 -15.59641 -15.04736 -14.53870 -13.99391 -13.58494 -12.92686 -12.71906 -12.28584 -12.19626 -12.14128 -11.75177 -11.64299 -11.39373 -11.20832 -10.73775 -10.46768 -9.93836 -9.45765 -9.07734 -8.56668 -7.15121 -6.79430 -4.70838 2.19155 2.93154 3.00570 3.05473 3.42991 3.60724 3.67129 3.90098 4.48056 4.72693 4.85604 5.18079 5.41938 5.53168 5.63747 5.78236 6.02288 6.05794 6.33085 6.69238 6.85845 7.04848 7.58589 7.64066 7.96726 8.29095 8.36882 8.54695 9.61739 10.11972 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.042197 B = 0.010208 C = 0.008403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.391163 B = 2742.265330 C = 3331.410255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.431 5.431 3 C 0.020 3.980 4 C 0.065 3.935 5 O -0.243 6.243 6 C 0.339 3.661 7 C -0.427 4.427 8 H 0.097 0.903 9 C 0.074 3.926 10 N -0.722 5.722 11 Si 0.930 3.070 12 H -0.266 1.266 13 H -0.274 1.274 14 H -0.259 1.259 15 N -0.498 5.498 16 C 0.052 3.948 17 C 0.330 3.670 18 N -0.459 5.459 19 H 0.038 0.962 20 H 0.071 0.929 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.037 0.963 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.534 2.714 -1.367 7.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.152 5.152 3 C -0.127 4.127 4 C -0.093 4.093 5 O -0.137 6.137 6 C 0.154 3.846 7 C -0.463 4.463 8 H 0.115 0.885 9 C -0.153 4.153 10 N -0.346 5.346 11 Si 0.753 3.247 12 H -0.191 1.191 13 H -0.199 1.199 14 H -0.183 1.183 15 N -0.229 5.229 16 C -0.077 4.077 17 C 0.016 3.984 18 N -0.139 5.139 19 H 0.057 0.943 20 H 0.090 0.910 21 H 0.095 0.905 22 H 0.089 0.911 23 H 0.094 0.906 24 H 0.055 0.945 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.275 2.821 -2.258 5.598 hybrid contribution -1.368 0.002 1.094 1.751 sum -5.643 2.823 -1.165 6.416 Atomic orbital electron populations 1.22352 0.85748 1.03360 1.00903 1.59135 1.09522 1.12869 1.33712 1.22721 1.01480 0.87430 1.01043 1.20736 0.89170 1.07341 0.92016 1.84457 1.38942 1.57449 1.32880 1.21858 0.80229 0.93187 0.89371 1.18118 0.95664 1.28337 1.04142 0.88528 1.25855 0.94184 0.95980 0.99238 1.70011 1.00475 1.30537 1.33584 0.85958 0.79526 0.79856 0.79363 1.19113 1.19879 1.18322 1.71690 1.20075 1.20622 1.10469 1.16915 0.85296 1.06907 0.98586 1.24147 0.91100 0.91716 0.91409 1.81092 1.09574 1.11697 1.11501 0.94345 0.91033 0.90497 0.91074 0.90566 0.94454 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.96 60.06 0.54 0.89 15 2 N -0.43 -7.98 5.02 -188.70 -0.95 -8.93 15 3 C 0.02 0.31 9.32 60.07 0.56 0.87 15 4 C 0.06 1.47 6.62 -14.61 -0.10 1.37 15 5 O -0.24 -5.92 10.03 2.81 0.03 -5.89 15 6 C 0.34 9.04 7.68 -16.75 -0.13 8.91 15 7 C -0.43 -10.81 9.43 -38.37 -0.36 -11.17 15 8 H 0.10 2.23 7.85 -52.49 -0.41 1.82 15 9 C 0.07 1.77 5.50 -17.29 -0.10 1.68 15 10 N -0.72 -18.72 11.84 55.56 0.66 -18.07 15 11 Si 0.93 17.48 29.56 -169.99 -5.03 12.46 15 12 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 13 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 14 H -0.26 -4.73 7.11 56.52 0.40 -4.32 15 15 N -0.50 -13.79 9.38 -10.66 -0.10 -13.89 15 16 C 0.05 1.28 6.82 -84.20 -0.57 0.71 15 17 C 0.33 7.74 13.73 -22.48 -0.31 7.43 15 18 N -0.46 -10.51 18.54 41.83 0.78 -9.74 15 19 H 0.04 0.58 8.13 -51.93 -0.42 0.16 15 20 H 0.07 0.84 8.12 -51.93 -0.42 0.41 15 21 H 0.08 1.18 8.13 -51.93 -0.42 0.76 15 22 H 0.07 1.24 5.92 -51.93 -0.31 0.93 15 23 H 0.08 0.95 8.12 -51.93 -0.42 0.53 15 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 15 25 H 0.28 6.58 8.29 -40.82 -0.34 6.24 15 LS Contribution 236.45 15.07 3.56 3.56 Total: -1.00 -28.83 236.45 -3.48 -32.31 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: -1.96 Total: -2.51 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -0.47 Total: 10.70 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.39 Total: -50.62 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: 0.03 Total: -5.89 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.83 -3.48 -32.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958719685.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.511 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds