Wall clock time and date at job start Mon Mar 30 2020 02:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99976 * 2 1 4 4 C 1.36656 * 111.00218 * 123.95221 * 2 1 3 5 5 O 1.34555 * 126.65211 * 359.97438 * 4 2 1 6 6 C 1.35088 * 108.01696 * 179.97438 * 5 4 2 7 7 C 1.39531 * 125.30960 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.40194 * 120.00094 * 179.97438 * 7 6 5 10 10 N 1.30718 * 119.99958 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99674 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47502 * 89.99798 * 11 9 7 13 13 H 1.48505 * 109.46953 * 209.99600 * 11 9 7 14 14 H 1.48502 * 109.47350 * 329.99485 * 11 9 7 15 15 N 1.32564 * 109.38678 * 359.97438 * 6 5 4 16 16 C 1.34012 * 108.78548 * 359.97438 * 15 6 5 17 17 C 1.43200 * 126.44401 * 179.97438 * 16 15 6 18 18 N 3.62876 * 122.53029 * 358.82559 * 3 1 2 19 19 H 1.09000 * 109.46975 * 296.04760 * 1 2 3 20 20 H 1.08995 * 109.47535 * 56.04339 * 1 2 3 21 21 H 1.08992 * 109.47212 * 176.04683 * 1 2 3 22 22 H 1.08996 * 109.47315 * 183.95827 * 3 2 1 23 23 H 1.09000 * 109.46780 * 303.95389 * 3 2 1 24 24 H 1.08998 * 109.47310 * 63.95270 * 3 2 1 25 25 H 0.97003 * 119.99850 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9588 -0.7125 1.0583 5 8 1.2388 -1.3470 2.0015 6 6 2.1006 -1.9287 2.8640 7 6 1.7382 -2.6815 3.9815 8 1 0.6947 -2.8364 4.2130 9 6 2.7286 -3.2368 4.8038 10 7 3.9916 -3.0497 4.5234 11 14 2.2433 -4.2440 6.3003 12 1 2.1130 -5.6722 5.9148 13 1 3.2866 -4.1074 7.3484 14 1 0.9448 -3.7531 6.8276 15 7 3.3443 -1.6737 2.4825 16 6 3.3100 -0.9261 1.3708 17 6 4.4399 -0.4357 0.6404 18 7 5.3361 -0.0440 0.0627 19 1 -0.3633 0.4513 0.9233 20 1 -0.3634 0.5740 -0.8523 21 1 -0.3633 -1.0251 -0.0708 22 1 3.0827 1.3433 -0.0709 23 1 1.5898 1.9163 -0.8525 24 1 1.7044 1.8724 0.9233 25 1 4.6768 -3.4342 5.0922 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958719685.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:58 Heat of formation + Delta-G solvation = 32.740580 kcal Electronic energy + Delta-G solvation = -13041.323855 eV Core-core repulsion = 10635.106097 eV Total energy + Delta-G solvation = -2406.217757 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.29170 -38.56629 -37.54540 -35.82893 -34.66887 -30.96757 -28.83035 -27.87353 -25.70470 -23.69716 -22.05963 -19.92497 -18.81378 -17.76378 -17.36610 -16.75295 -16.07644 -15.49354 -15.24262 -14.67048 -14.52755 -14.03145 -13.80349 -13.46639 -13.27949 -13.06887 -12.94808 -12.72686 -12.49581 -11.95113 -11.74877 -11.19763 -10.73534 -10.48972 -8.95279 -8.58590 -6.60999 0.38831 1.37881 1.46622 1.57761 1.64362 1.85258 1.96632 2.29086 2.64664 2.97287 3.18814 3.28350 4.16294 4.22989 4.41221 4.56132 4.57322 4.78923 4.88725 4.99582 5.16837 5.22875 5.91770 5.92580 6.12341 6.44441 6.50385 6.66599 7.72256 8.36247 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.042197 B = 0.010208 C = 0.008403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.391163 B = 2742.265330 C = 3331.410255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.439 5.439 3 C 0.021 3.979 4 C 0.102 3.898 5 O -0.246 6.246 6 C 0.312 3.688 7 C -0.453 4.453 8 H 0.112 0.888 9 C 0.030 3.970 10 N -0.770 5.770 11 Si 1.013 2.987 12 H -0.259 1.259 13 H -0.269 1.269 14 H -0.247 1.247 15 N -0.537 5.537 16 C 0.007 3.993 17 C 0.332 3.668 18 N -0.458 5.458 19 H 0.039 0.961 20 H 0.115 0.885 21 H 0.070 0.930 22 H 0.052 0.948 23 H 0.120 0.880 24 H 0.041 0.959 25 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.149 3.054 -1.430 8.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.161 5.161 3 C -0.124 4.124 4 C -0.057 4.057 5 O -0.139 6.139 6 C 0.126 3.874 7 C -0.488 4.488 8 H 0.130 0.870 9 C -0.191 4.191 10 N -0.395 5.395 11 Si 0.831 3.169 12 H -0.184 1.184 13 H -0.194 1.194 14 H -0.170 1.170 15 N -0.269 5.269 16 C -0.119 4.119 17 C 0.019 3.981 18 N -0.138 5.138 19 H 0.058 0.942 20 H 0.133 0.867 21 H 0.089 0.911 22 H 0.071 0.929 23 H 0.139 0.861 24 H 0.060 0.940 25 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.898 3.200 -2.371 7.117 hybrid contribution -0.946 0.000 0.930 1.326 sum -6.844 3.200 -1.441 7.691 Atomic orbital electron populations 1.22526 0.83048 1.03960 1.02928 1.59128 1.11938 1.14235 1.30843 1.22790 1.00584 0.85710 1.03295 1.21289 0.88723 1.04739 0.90909 1.84466 1.38945 1.57551 1.32967 1.22277 0.80467 0.94312 0.90365 1.18662 0.96920 1.28833 1.04405 0.87028 1.27001 0.93625 0.96422 1.02084 1.70124 1.01998 1.32005 1.35368 0.84747 0.79564 0.77860 0.74728 1.18382 1.19375 1.16970 1.71583 1.20981 1.22247 1.12135 1.17050 0.86626 1.08923 0.99351 1.24012 0.91042 0.91680 0.91373 1.81067 1.09104 1.11983 1.11625 0.94231 0.86689 0.91124 0.92888 0.86121 0.93995 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 8.96 127.69 1.14 1.72 15 2 N -0.44 -15.31 5.02 -862.06 -4.33 -19.64 15 3 C 0.02 0.62 9.32 127.69 1.19 1.81 15 4 C 0.10 4.56 6.62 84.45 0.56 5.12 15 5 O -0.25 -12.01 10.03 -12.86 -0.13 -12.14 15 6 C 0.31 17.04 7.68 84.89 0.65 17.69 15 7 C -0.45 -23.18 9.43 23.06 0.22 -22.96 15 8 H 0.11 5.13 7.85 -2.91 -0.02 5.11 15 9 C 0.03 1.47 5.50 85.33 0.47 1.94 15 10 N -0.77 -40.92 11.84 21.87 0.26 -40.66 15 11 Si 1.01 35.31 29.56 68.60 2.03 37.34 15 12 H -0.26 -8.69 7.11 99.48 0.71 -7.99 15 13 H -0.27 -9.07 7.11 99.48 0.71 -8.37 15 14 H -0.25 -8.00 7.11 99.48 0.71 -7.30 15 15 N -0.54 -30.72 9.38 -300.68 -2.82 -33.54 15 16 C 0.01 0.36 6.82 40.57 0.28 0.64 15 17 C 0.33 15.79 13.73 88.33 1.21 17.00 15 18 N -0.46 -21.03 18.54 19.00 0.35 -20.67 15 19 H 0.04 1.08 8.13 -2.39 -0.02 1.06 15 20 H 0.11 2.13 8.12 -2.39 -0.02 2.11 15 21 H 0.07 2.00 8.13 -2.39 -0.02 1.98 15 22 H 0.05 1.75 5.92 -2.39 -0.01 1.74 15 23 H 0.12 2.45 8.12 -2.39 -0.02 2.43 15 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 15 25 H 0.29 13.77 8.29 -92.71 -0.77 13.00 15 Total: -1.00 -63.70 236.45 2.30 -61.41 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.22 Total: 4.95 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 5.72 Total: 22.96 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -6.54 Total: -114.51 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.13 Total: -12.14 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Total: -63.70 2.30 -61.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958719685.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.146 kcal (2) G-P(sol) polarization free energy of solvation -63.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds