Wall clock time and date at job start Mon Mar 30 2020 02:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86794 * 120.00099 * 2 1 4 4 H 1.48505 * 109.46989 * 240.00200 * 3 2 1 5 5 H 1.48491 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46927 * 120.00420 * 3 2 1 7 7 C 1.39864 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00210 * 197.79602 * 7 2 1 9 9 C 1.41270 * 120.00221 * 17.80064 * 7 2 1 10 10 C 1.40947 * 120.10083 * 204.50772 * 9 7 2 11 11 C 1.36391 * 120.25901 * 180.02562 * 10 9 7 12 12 C 1.39146 * 120.47766 * 359.97438 * 11 10 9 13 13 O 1.35534 * 119.90720 * 179.97438 * 12 11 10 14 14 C 1.40640 * 120.19184 * 359.97438 * 12 11 10 15 15 C 1.47513 * 120.13653 * 180.02562 * 14 12 11 16 16 N 1.29400 * 119.99454 * 0.02562 * 15 14 12 17 17 O 1.41596 * 119.99600 * 180.02562 * 16 15 14 18 18 C 1.38967 * 119.73482 * 0.27792 * 14 12 11 19 19 H 0.97000 * 120.00026 * 359.97438 * 1 2 3 20 20 H 1.07996 * 119.86939 * 359.97438 * 10 9 7 21 21 H 1.08003 * 119.75879 * 179.97438 * 11 10 9 22 22 H 0.96703 * 113.99988 * 270.02603 * 13 12 11 23 23 H 1.07992 * 120.00430 * 179.72635 * 15 14 12 24 24 H 0.96696 * 113.99847 * 180.02562 * 17 16 15 25 25 H 1.08002 * 120.23092 * 179.70696 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6963 -1.2126 5 1 1.2781 2.7464 0.0006 6 1 3.0968 1.6962 1.2125 7 6 2.0082 -1.2113 -0.0005 8 1 3.0494 -1.2339 0.2853 9 6 1.3525 -2.4053 -0.3751 10 6 1.8284 -3.6484 0.0884 11 6 1.1981 -4.8031 -0.2716 12 6 0.0797 -4.7685 -1.0987 13 8 -0.5373 -5.9231 -1.4496 14 6 -0.4124 -3.5388 -1.5716 15 6 -1.5985 -3.5034 -2.4479 16 7 -2.1886 -4.6053 -2.7825 17 8 -3.3268 -4.5714 -3.6241 18 6 0.2264 -2.3574 -1.2143 19 1 -0.4850 0.8400 0.0004 20 1 2.6959 -3.6867 0.7305 21 1 1.5699 -5.7513 0.0879 22 1 -0.1934 -6.3220 -2.2606 23 1 -1.9772 -2.5576 -2.8062 24 1 -3.6985 -5.4427 -3.8183 25 1 -0.1419 -1.4090 -1.5767 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082509250.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:48 Heat of formation + Delta-G solvation = -17.042039 kcal Electronic energy + Delta-G solvation = -12769.724956 eV Core-core repulsion = 10329.055712 eV Total energy + Delta-G solvation = -2440.669245 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.42664 -36.18214 -35.70268 -33.43586 -32.68622 -29.21044 -28.98095 -24.90742 -22.58551 -21.22233 -19.45467 -17.34992 -17.26497 -16.75339 -15.33564 -14.88469 -14.33104 -14.00734 -13.59927 -13.07952 -12.85559 -12.34463 -11.83679 -11.57626 -11.26827 -10.96318 -10.87936 -10.31458 -9.99482 -9.68958 -9.64328 -9.19849 -8.87728 -7.52183 -7.34641 -6.89224 -4.45949 1.87095 2.67050 3.01589 3.02368 3.07224 3.44108 3.66990 3.84419 4.46104 5.34686 5.46938 5.62684 6.13145 6.21460 6.65367 6.80108 6.92653 7.08171 7.21336 7.31137 7.41762 7.74711 7.81606 8.01392 8.32242 8.37286 8.62168 8.71761 8.93204 10.05371 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.040265 B = 0.009464 C = 0.007832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.218926 B = 2957.957392 C = 3574.103592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.193 4.193 11 C -0.117 4.117 12 C 0.004 3.996 13 O -0.484 6.484 14 C -0.072 4.072 15 C 0.163 3.837 16 N -0.326 5.326 17 O -0.441 6.441 18 C -0.118 4.118 19 H 0.284 0.716 20 H 0.100 0.900 21 H 0.099 0.901 22 H 0.355 0.645 23 H 0.109 0.891 24 H 0.395 0.605 25 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.360 -2.171 -3.396 4.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.213 4.213 11 C -0.136 4.136 12 C -0.043 4.043 13 O -0.290 6.290 14 C -0.074 4.074 15 C -0.046 4.046 16 N -0.071 5.071 17 O -0.344 6.344 18 C -0.140 4.140 19 H 0.095 0.905 20 H 0.118 0.882 21 H 0.117 0.883 22 H 0.208 0.792 23 H 0.126 0.874 24 H 0.242 0.758 25 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.179 -2.241 -2.816 3.603 hybrid contribution 0.120 0.984 -0.645 1.183 sum -0.059 -1.257 -3.461 3.682 Atomic orbital electron populations 1.69813 1.07606 1.29742 1.34547 1.25937 0.94773 1.01524 0.92111 0.86309 0.80119 0.79946 0.80083 1.18699 1.20267 1.18921 1.19515 0.98287 0.91048 1.39789 0.90031 1.17520 0.91283 0.92365 0.89238 1.20765 1.02992 0.92483 1.05109 1.20553 0.95305 0.97702 1.00021 1.18110 0.96844 0.84135 1.05231 1.84800 1.61864 1.37095 1.45275 1.18593 0.94488 0.94496 0.99866 1.24550 0.92908 0.94639 0.92528 1.77018 0.97683 1.25712 1.06647 1.88356 1.43187 1.35233 1.67652 1.21421 0.97902 0.95388 0.99314 0.90484 0.88155 0.88278 0.79235 0.87365 0.75809 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.45 10.96 55.54 0.61 -18.84 15 2 C 0.07 1.77 5.13 -17.34 -0.09 1.68 15 3 Si 0.91 17.66 29.59 -169.99 -5.03 12.63 15 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 15 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 7 C -0.46 -11.36 9.04 -37.82 -0.34 -11.70 15 8 H 0.08 1.93 7.91 -52.49 -0.41 1.51 15 9 C 0.10 2.47 5.57 -106.86 -0.60 1.88 15 10 C -0.19 -4.48 9.72 -39.22 -0.38 -4.86 15 11 C -0.12 -2.58 9.90 -39.91 -0.40 -2.98 15 12 C 0.00 0.09 6.74 -38.34 -0.26 -0.17 15 13 O -0.48 -10.04 11.35 -18.30 -0.21 -10.25 15 14 C -0.07 -1.68 5.88 -104.94 -0.62 -2.30 15 15 C 0.16 3.49 10.90 -14.80 -0.16 3.33 15 16 N -0.33 -6.68 9.96 32.11 0.32 -6.36 15 17 O -0.44 -7.79 14.95 -11.47 -0.17 -7.96 15 18 C -0.12 -2.91 8.42 -38.45 -0.32 -3.23 15 19 H 0.28 6.37 8.30 -40.82 -0.34 6.03 15 20 H 0.10 2.14 8.06 -52.49 -0.42 1.72 15 21 H 0.10 1.94 8.06 -52.48 -0.42 1.51 15 22 H 0.36 6.01 9.06 45.56 0.41 6.42 15 23 H 0.11 2.17 8.06 -52.49 -0.42 1.75 15 24 H 0.40 4.85 9.28 45.56 0.42 5.27 15 25 H 0.13 3.21 6.17 -52.49 -0.32 2.88 15 LS Contribution 234.30 15.07 3.53 3.53 Total: -1.00 -28.29 234.30 -4.42 -32.71 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -0.31 Total: 12.90 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -3.16 Total: -18.34 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.93 Total: -25.21 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.38 Total: -18.22 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.29 -4.42 -32.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082509250.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.666 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds