Wall clock time and date at job start Mon Mar 30 2020 02:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86794 * 120.00099 * 2 1 4 4 H 1.48505 * 109.46989 * 240.00200 * 3 2 1 5 5 H 1.48491 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46927 * 120.00420 * 3 2 1 7 7 C 1.39864 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00210 * 197.79602 * 7 2 1 9 9 C 1.41270 * 120.00221 * 17.80064 * 7 2 1 10 10 C 1.40947 * 120.10083 * 204.50772 * 9 7 2 11 11 C 1.36391 * 120.25901 * 180.02562 * 10 9 7 12 12 C 1.39146 * 120.47766 * 359.97438 * 11 10 9 13 13 O 1.35534 * 119.90720 * 179.97438 * 12 11 10 14 14 C 1.40640 * 120.19184 * 359.97438 * 12 11 10 15 15 C 1.47513 * 120.13653 * 180.02562 * 14 12 11 16 16 N 1.29400 * 119.99454 * 0.02562 * 15 14 12 17 17 O 1.41596 * 119.99600 * 180.02562 * 16 15 14 18 18 C 1.38967 * 119.73482 * 0.27792 * 14 12 11 19 19 H 0.97000 * 120.00026 * 359.97438 * 1 2 3 20 20 H 1.07996 * 119.86939 * 359.97438 * 10 9 7 21 21 H 1.08003 * 119.75879 * 179.97438 * 11 10 9 22 22 H 0.96703 * 113.99988 * 270.02603 * 13 12 11 23 23 H 1.07992 * 120.00430 * 179.72635 * 15 14 12 24 24 H 0.96696 * 113.99847 * 180.02562 * 17 16 15 25 25 H 1.08002 * 120.23092 * 179.70696 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6963 -1.2126 5 1 1.2781 2.7464 0.0006 6 1 3.0968 1.6962 1.2125 7 6 2.0082 -1.2113 -0.0005 8 1 3.0494 -1.2339 0.2853 9 6 1.3525 -2.4053 -0.3751 10 6 1.8284 -3.6484 0.0884 11 6 1.1981 -4.8031 -0.2716 12 6 0.0797 -4.7685 -1.0987 13 8 -0.5373 -5.9231 -1.4496 14 6 -0.4124 -3.5388 -1.5716 15 6 -1.5985 -3.5034 -2.4479 16 7 -2.1886 -4.6053 -2.7825 17 8 -3.3268 -4.5714 -3.6241 18 6 0.2264 -2.3574 -1.2143 19 1 -0.4850 0.8400 0.0004 20 1 2.6959 -3.6867 0.7305 21 1 1.5699 -5.7513 0.0879 22 1 -0.1934 -6.3220 -2.2606 23 1 -1.9772 -2.5576 -2.8062 24 1 -3.6985 -5.4427 -3.8183 25 1 -0.1419 -1.4090 -1.5767 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082509250.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:47 Heat of formation + Delta-G solvation = -37.433858 kcal Electronic energy + Delta-G solvation = -12770.609212 eV Core-core repulsion = 10329.055712 eV Total energy + Delta-G solvation = -2441.553501 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.16536 -37.75306 -37.40891 -35.17829 -34.32515 -30.97541 -30.73016 -26.71035 -24.29343 -23.00361 -21.17672 -19.08332 -18.91649 -18.42323 -17.05149 -16.48310 -16.00979 -15.69002 -15.30650 -14.68578 -14.48161 -14.05760 -13.55117 -13.35410 -12.92354 -12.61478 -12.44977 -12.05396 -11.71017 -11.32973 -11.30243 -10.91041 -10.55088 -9.29993 -9.12060 -8.64750 -6.31582 0.14420 0.92062 1.43404 1.48235 1.55306 1.73823 2.20405 2.23526 2.70328 3.58810 3.80961 3.92370 4.43506 4.56304 4.94231 5.04497 5.16247 5.30804 5.49062 5.66151 5.75644 5.99466 6.07086 6.22329 6.55432 6.84629 6.88923 6.91260 7.29297 8.31930 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.040265 B = 0.009464 C = 0.007832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.218926 B = 2957.957392 C = 3574.103592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.490 4.490 8 H 0.084 0.916 9 C 0.071 3.929 10 C -0.201 4.201 11 C -0.117 4.117 12 C 0.003 3.997 13 O -0.486 6.486 14 C -0.079 4.079 15 C 0.147 3.853 16 N -0.325 5.325 17 O -0.433 6.433 18 C -0.138 4.138 19 H 0.290 0.710 20 H 0.114 0.886 21 H 0.127 0.873 22 H 0.376 0.624 23 H 0.116 0.884 24 H 0.419 0.581 25 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 -2.547 -3.718 4.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.518 4.518 8 H 0.103 0.897 9 C 0.068 3.932 10 C -0.222 4.222 11 C -0.136 4.136 12 C -0.045 4.045 13 O -0.295 6.295 14 C -0.081 4.081 15 C -0.062 4.062 16 N -0.066 5.066 17 O -0.344 6.344 18 C -0.160 4.160 19 H 0.101 0.899 20 H 0.132 0.868 21 H 0.145 0.855 22 H 0.231 0.769 23 H 0.133 0.867 24 H 0.270 0.730 25 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.155 -2.662 -3.139 4.119 hybrid contribution -0.019 0.896 -0.624 1.092 sum -0.174 -1.767 -3.763 4.161 Atomic orbital electron populations 1.69870 1.09017 1.30913 1.35192 1.26748 0.95431 1.04559 0.91108 0.85236 0.78737 0.75573 0.80129 1.18346 1.19550 1.18375 1.19792 0.98688 0.92041 1.41326 0.89746 1.17878 0.91969 0.93449 0.89880 1.20985 1.03562 0.92344 1.05279 1.20819 0.94883 0.98502 0.99391 1.18269 0.96731 0.84516 1.04945 1.84725 1.61961 1.36257 1.46556 1.18754 0.94997 0.94390 0.99957 1.24401 0.93094 0.95295 0.93405 1.76824 0.98199 1.25431 1.06166 1.88347 1.41788 1.37682 1.66549 1.21338 0.98755 0.95502 1.00434 0.89902 0.86824 0.85514 0.76935 0.86662 0.73006 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.17 10.96 21.81 0.24 -40.93 15 2 C 0.04 1.76 5.13 85.23 0.44 2.20 15 3 Si 0.98 36.08 29.59 68.60 2.03 38.11 15 4 H -0.26 -9.30 7.11 99.48 0.71 -8.59 15 5 H -0.27 -9.54 7.11 99.48 0.71 -8.84 15 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 7 C -0.49 -24.71 9.04 23.41 0.21 -24.50 15 8 H 0.08 4.04 7.91 -2.91 -0.02 4.02 15 9 C 0.07 3.61 5.57 -21.31 -0.12 3.49 15 10 C -0.20 -9.29 9.72 22.50 0.22 -9.07 15 11 C -0.12 -5.02 9.90 22.06 0.22 -4.80 15 12 C 0.00 0.12 6.74 23.07 0.16 0.28 15 13 O -0.49 -19.09 11.35 -88.39 -1.00 -20.10 15 14 C -0.08 -3.67 5.88 -20.07 -0.12 -3.78 15 15 C 0.15 6.22 10.90 87.50 0.95 7.17 15 16 N -0.32 -12.68 9.96 -52.32 -0.52 -13.20 15 17 O -0.43 -14.12 14.95 -38.78 -0.58 -14.70 15 18 C -0.14 -6.95 8.42 23.00 0.19 -6.76 15 19 H 0.29 13.16 8.30 -92.71 -0.77 12.40 15 20 H 0.11 4.79 8.06 -2.91 -0.02 4.77 15 21 H 0.13 4.63 8.06 -2.91 -0.02 4.60 15 22 H 0.38 11.71 9.06 -74.06 -0.67 11.04 15 23 H 0.12 4.61 8.06 -2.91 -0.02 4.59 15 24 H 0.42 8.88 9.28 -74.06 -0.69 8.19 15 25 H 0.12 6.02 6.17 -2.91 -0.02 6.00 15 Total: -1.00 -59.14 234.30 2.20 -56.94 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: -0.12 Total: 29.65 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 2.15 Total: -35.78 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.28 Total: -54.12 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.58 Total: -34.80 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.11 kcal Total: -59.14 2.20 -56.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082509250.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.508 kcal (2) G-P(sol) polarization free energy of solvation -59.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds