Wall clock time and date at job start Mon Mar 30 2020 02:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00294 * 2 1 4 4 C 1.50697 * 109.47116 * 293.95637 * 3 2 1 5 5 H 1.07993 * 120.00494 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99704 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00108 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99813 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47400 * 90.00615 * 8 6 4 10 10 H 1.48505 * 109.47072 * 210.00072 * 8 6 4 11 11 H 1.48495 * 109.47610 * 330.00189 * 8 6 4 12 12 C 1.39279 * 110.99779 * 123.96099 * 2 1 3 13 13 N 1.32255 * 119.74484 * 295.43834 * 12 2 1 14 14 C 1.32048 * 121.70079 * 179.97438 * 13 12 2 15 15 C 1.38010 * 120.99031 * 0.02562 * 14 13 12 16 16 C 1.38839 * 119.38210 * 359.97203 * 15 14 13 17 17 C 1.38855 * 118.44436 * 0.02562 * 16 15 14 18 18 N 1.40009 * 120.51589 * 179.97438 * 17 16 15 19 19 H 1.08998 * 109.46954 * 301.76982 * 1 2 3 20 20 H 1.09001 * 109.47148 * 61.76209 * 1 2 3 21 21 H 1.08998 * 109.47165 * 181.76447 * 1 2 3 22 22 H 1.09003 * 109.46912 * 53.95645 * 3 2 1 23 23 H 1.08992 * 109.47055 * 173.95410 * 3 2 1 24 24 H 0.96996 * 119.99866 * 179.97438 * 7 6 4 25 25 H 1.07994 * 119.50493 * 179.72250 * 14 13 12 26 26 H 1.08001 * 120.30935 * 179.97438 * 15 14 13 27 27 H 1.08002 * 120.77471 * 180.02562 * 16 15 14 28 28 H 0.97004 * 120.00164 * 185.18532 * 18 17 16 29 29 H 0.96998 * 119.99806 * 5.18140 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5116 -2.0484 6 6 2.0269 3.3495 -1.5284 7 7 2.7122 4.0018 -0.6148 8 14 1.5819 4.1873 -3.1375 9 1 0.2696 4.8676 -2.9951 10 1 2.6240 5.1888 -3.4789 11 1 1.4985 3.1720 -4.2178 12 6 1.9681 -0.7264 1.0785 13 7 1.7427 -0.3073 2.3125 14 6 2.1971 -0.9659 3.3629 15 6 2.9305 -2.1253 3.2120 16 6 3.1925 -2.6043 1.9354 17 6 2.7029 -1.8923 0.8485 18 7 2.9419 -2.3358 -0.4578 19 1 -0.3633 0.5411 0.8737 20 1 -0.3633 0.4862 -0.9054 21 1 -0.3633 -1.0272 0.0316 22 1 1.5612 1.9273 0.8310 23 1 3.0797 1.3443 0.1082 24 1 2.9868 4.9179 -0.7768 25 1 1.9960 -0.5891 4.3548 26 1 3.2972 -2.6550 4.0788 27 1 3.7637 -3.5095 1.7913 28 1 2.6621 -1.7945 -1.2127 29 1 3.3873 -3.1843 -0.6081 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833131.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:30 Heat of formation + Delta-G solvation = 45.725344 kcal Electronic energy + Delta-G solvation = -13298.752750 eV Core-core repulsion = 11028.931148 eV Total energy + Delta-G solvation = -2269.821601 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.88184 -36.00951 -34.54381 -32.55259 -30.75457 -28.33637 -27.12500 -25.10980 -23.01847 -22.11692 -20.43239 -17.08443 -16.67605 -16.29645 -15.78879 -14.82786 -14.54185 -13.96153 -13.91311 -13.03934 -12.74476 -12.63102 -12.06223 -11.83729 -11.22624 -10.92755 -10.81173 -10.74150 -10.47612 -10.01498 -9.37482 -9.00265 -8.92044 -8.43849 -7.52860 -7.13453 -5.99763 -4.02277 1.66292 1.92737 3.33086 3.38998 3.42438 4.24924 4.34384 4.42119 4.70789 5.21035 5.26109 5.35562 5.47848 5.82419 5.91269 6.17141 6.26154 6.46116 6.58968 6.75684 6.91933 7.33477 7.49794 7.70497 7.86544 8.06805 8.18419 8.20485 8.62265 8.65280 9.04698 9.61185 11.11022 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.048280 B = 0.008506 C = 0.008090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.811164 B = 3291.160628 C = 3460.334501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.491 5.491 3 C 0.203 3.797 4 C -0.511 4.511 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.245 3.755 13 N -0.471 5.471 14 C 0.038 3.962 15 C -0.141 4.141 16 C -0.170 4.170 17 C 0.191 3.809 18 N -0.860 5.860 19 H 0.029 0.971 20 H 0.077 0.923 21 H 0.040 0.960 22 H 0.008 0.992 23 H 0.025 0.975 24 H 0.261 0.739 25 H 0.143 0.857 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.413 0.587 29 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.018 -12.406 3.430 12.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.215 5.215 3 C 0.079 3.921 4 C -0.550 4.550 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.009 3.991 13 N -0.182 5.182 14 C -0.120 4.120 15 C -0.162 4.162 16 C -0.201 4.201 17 C 0.081 3.919 18 N -0.399 5.399 19 H 0.047 0.953 20 H 0.095 0.905 21 H 0.059 0.941 22 H 0.026 0.974 23 H 0.043 0.957 24 H 0.071 0.929 25 H 0.160 0.840 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.245 0.755 29 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.271 -11.652 3.173 12.080 hybrid contribution 0.237 0.088 -0.470 0.533 sum -0.034 -11.565 2.704 11.877 Atomic orbital electron populations 1.22144 0.86980 0.99166 1.01774 1.60328 1.08154 1.19074 1.33957 1.19734 0.95117 0.80160 0.97132 1.21147 1.35139 0.97092 1.01625 0.91802 1.24987 0.95264 0.97292 0.96977 1.69981 1.38082 1.11383 1.34020 0.86491 0.78008 0.79232 0.83607 1.20709 1.21303 1.19802 1.19881 0.97948 0.93026 0.88224 1.67760 1.19518 1.31490 0.99445 1.22192 0.99101 0.93686 0.97061 1.21727 0.99789 0.97770 0.96874 1.20861 1.05483 1.02112 0.91678 1.18481 0.93883 0.93103 0.86413 1.42394 1.67794 1.25167 1.04583 0.95274 0.90454 0.94070 0.97396 0.95711 0.92903 0.83961 0.85674 0.85628 0.75539 0.78282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.98 9.17 60.07 0.55 1.53 15 2 N -0.49 -11.12 3.92 -182.19 -0.71 -11.84 15 3 C 0.20 5.54 4.46 -4.98 -0.02 5.52 15 4 C -0.51 -14.48 8.54 -34.44 -0.29 -14.77 15 5 H 0.06 1.75 7.10 -52.49 -0.37 1.37 15 6 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 7 N -0.90 -27.24 13.29 55.43 0.74 -26.50 15 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 15 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 12 C 0.25 5.14 5.30 -154.65 -0.82 4.32 15 13 N -0.47 -9.92 9.81 -12.24 -0.12 -10.04 15 14 C 0.04 0.65 11.17 -17.54 -0.20 0.45 15 15 C -0.14 -2.01 10.10 -39.44 -0.40 -2.41 15 16 C -0.17 -2.49 10.04 -39.13 -0.39 -2.88 15 17 C 0.19 3.33 6.81 -83.34 -0.57 2.76 15 18 N -0.86 -12.56 9.08 32.62 0.30 -12.26 15 19 H 0.03 0.63 8.06 -51.93 -0.42 0.21 15 20 H 0.08 1.61 6.91 -51.93 -0.36 1.25 15 21 H 0.04 0.75 8.11 -51.93 -0.42 0.33 15 22 H 0.01 0.24 8.06 -51.93 -0.42 -0.17 15 23 H 0.02 0.74 8.06 -51.93 -0.42 0.32 15 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 25 H 0.14 2.01 8.06 -52.49 -0.42 1.59 15 26 H 0.13 1.33 8.06 -52.49 -0.42 0.90 15 27 H 0.13 1.42 8.06 -52.49 -0.42 1.00 15 28 H 0.41 6.56 8.15 -40.82 -0.33 6.23 15 29 H 0.39 4.27 8.86 -40.82 -0.36 3.90 15 LS Contribution 253.78 15.07 3.82 3.82 Total: -1.00 -32.06 253.78 -6.74 -38.80 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.51 Total: 5.28 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.24 Total: -3.94 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.20 Total: -60.64 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.06 -6.74 -38.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833131.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.521 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds