Wall clock time and date at job start Mon Mar 30 2020 02:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00294 * 2 1 4 4 C 1.50697 * 109.47116 * 293.95637 * 3 2 1 5 5 H 1.07993 * 120.00494 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99704 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00108 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99813 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47400 * 90.00615 * 8 6 4 10 10 H 1.48505 * 109.47072 * 210.00072 * 8 6 4 11 11 H 1.48495 * 109.47610 * 330.00189 * 8 6 4 12 12 C 1.39279 * 110.99779 * 123.96099 * 2 1 3 13 13 N 1.32255 * 119.74484 * 295.43834 * 12 2 1 14 14 C 1.32048 * 121.70079 * 179.97438 * 13 12 2 15 15 C 1.38010 * 120.99031 * 0.02562 * 14 13 12 16 16 C 1.38839 * 119.38210 * 359.97203 * 15 14 13 17 17 C 1.38855 * 118.44436 * 0.02562 * 16 15 14 18 18 N 1.40009 * 120.51589 * 179.97438 * 17 16 15 19 19 H 1.08998 * 109.46954 * 301.76982 * 1 2 3 20 20 H 1.09001 * 109.47148 * 61.76209 * 1 2 3 21 21 H 1.08998 * 109.47165 * 181.76447 * 1 2 3 22 22 H 1.09003 * 109.46912 * 53.95645 * 3 2 1 23 23 H 1.08992 * 109.47055 * 173.95410 * 3 2 1 24 24 H 0.96996 * 119.99866 * 179.97438 * 7 6 4 25 25 H 1.07994 * 119.50493 * 179.72250 * 14 13 12 26 26 H 1.08001 * 120.30935 * 179.97438 * 15 14 13 27 27 H 1.08002 * 120.77471 * 180.02562 * 16 15 14 28 28 H 0.97004 * 120.00164 * 185.18532 * 18 17 16 29 29 H 0.96998 * 119.99806 * 5.18140 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5116 -2.0484 6 6 2.0269 3.3495 -1.5284 7 7 2.7122 4.0018 -0.6148 8 14 1.5819 4.1873 -3.1375 9 1 0.2696 4.8676 -2.9951 10 1 2.6240 5.1888 -3.4789 11 1 1.4985 3.1720 -4.2178 12 6 1.9681 -0.7264 1.0785 13 7 1.7427 -0.3073 2.3125 14 6 2.1971 -0.9659 3.3629 15 6 2.9305 -2.1253 3.2120 16 6 3.1925 -2.6043 1.9354 17 6 2.7029 -1.8923 0.8485 18 7 2.9419 -2.3358 -0.4578 19 1 -0.3633 0.5411 0.8737 20 1 -0.3633 0.4862 -0.9054 21 1 -0.3633 -1.0272 0.0316 22 1 1.5612 1.9273 0.8310 23 1 3.0797 1.3443 0.1082 24 1 2.9868 4.9179 -0.7768 25 1 1.9960 -0.5891 4.3548 26 1 3.2972 -2.6550 4.0788 27 1 3.7637 -3.5095 1.7913 28 1 2.6621 -1.7945 -1.2127 29 1 3.3873 -3.1843 -0.6081 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833131.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:29 Heat of formation + Delta-G solvation = 21.904009 kcal Electronic energy + Delta-G solvation = -13299.785720 eV Core-core repulsion = 11028.931148 eV Total energy + Delta-G solvation = -2270.854572 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.26430 -37.70044 -35.81629 -34.68184 -32.13376 -29.83096 -29.05789 -26.82822 -24.72851 -23.52450 -22.09273 -18.75013 -18.17091 -17.83148 -17.34529 -16.70703 -15.91283 -15.71440 -15.29097 -14.79316 -14.30943 -14.06512 -13.88750 -13.25529 -13.03987 -12.83276 -12.61182 -12.38129 -12.10297 -12.03502 -11.42269 -10.64477 -10.40759 -10.27213 -9.36493 -8.42547 -8.19520 -6.32764 0.35888 0.65646 1.41915 1.44298 1.55816 2.40208 2.99665 3.08317 3.09715 3.15161 3.94408 4.11635 4.32400 4.34746 4.65581 4.71545 4.75842 4.99409 5.08648 5.19564 5.23949 5.36107 5.63384 5.78206 6.03019 6.12899 6.45267 6.81525 6.83687 7.10371 7.31213 7.37737 8.91526 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.048280 B = 0.008506 C = 0.008090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.811164 B = 3291.160628 C = 3460.334501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.483 5.483 3 C 0.228 3.772 4 C -0.525 4.525 5 H 0.072 0.928 6 C -0.001 4.001 7 N -0.938 5.938 8 Si 0.977 3.023 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.258 1.258 12 C 0.188 3.812 13 N -0.515 5.515 14 C 0.018 3.982 15 C -0.119 4.119 16 C -0.161 4.161 17 C 0.186 3.814 18 N -0.850 5.850 19 H 0.008 0.992 20 H 0.072 0.928 21 H 0.068 0.932 22 H -0.037 1.037 23 H -0.013 1.013 24 H 0.264 0.736 25 H 0.163 0.837 26 H 0.173 0.827 27 H 0.169 0.831 28 H 0.407 0.593 29 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 -14.446 3.031 14.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.206 5.206 3 C 0.102 3.898 4 C -0.563 4.563 5 H 0.091 0.909 6 C -0.199 4.199 7 N -0.578 5.578 8 Si 0.801 3.199 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.182 1.182 12 C -0.047 4.047 13 N -0.227 5.227 14 C -0.142 4.142 15 C -0.139 4.139 16 C -0.192 4.192 17 C 0.075 3.925 18 N -0.390 5.390 19 H 0.027 0.973 20 H 0.090 0.910 21 H 0.087 0.913 22 H -0.019 1.019 23 H 0.005 0.995 24 H 0.073 0.927 25 H 0.180 0.820 26 H 0.191 0.809 27 H 0.187 0.813 28 H 0.236 0.764 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.109 -13.750 2.753 14.023 hybrid contribution 0.172 0.599 -0.180 0.648 sum 0.281 -13.151 2.573 13.403 Atomic orbital electron populations 1.22095 0.86386 1.00452 1.00456 1.60171 1.08722 1.15916 1.35796 1.19202 0.92460 0.82795 0.95322 1.21481 1.35168 0.97686 1.02003 0.90939 1.26026 0.94816 0.98019 1.01024 1.70142 1.39303 1.11859 1.36528 0.85268 0.77806 0.78094 0.78726 1.19867 1.20903 1.18202 1.19938 1.01642 0.95195 0.87876 1.67578 1.21150 1.33405 1.00517 1.22709 0.99756 0.94865 0.96872 1.22226 0.97018 0.96130 0.98486 1.21397 1.04325 1.02713 0.90751 1.18626 0.93258 0.92384 0.88223 1.42347 1.67413 1.25781 1.03458 0.97295 0.90961 0.91312 1.01896 0.99531 0.92704 0.81991 0.80934 0.81338 0.76355 0.76012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.30 9.17 127.69 1.17 3.47 15 2 N -0.48 -22.66 3.92 -730.33 -2.86 -25.53 15 3 C 0.23 13.19 4.46 85.56 0.38 13.57 15 4 C -0.53 -30.59 8.54 25.60 0.22 -30.38 15 5 H 0.07 4.00 7.10 -2.91 -0.02 3.98 15 6 C 0.00 -0.06 5.46 84.65 0.46 0.40 15 7 N -0.94 -58.96 13.29 21.45 0.28 -58.67 15 8 Si 0.98 44.85 29.54 68.60 2.03 46.87 15 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 11 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 12 C 0.19 8.01 5.30 133.16 0.71 8.72 15 13 N -0.51 -22.24 9.81 -192.63 -1.89 -24.13 15 14 C 0.02 0.58 11.17 84.61 0.94 1.53 15 15 C -0.12 -2.94 10.10 22.36 0.23 -2.71 15 16 C -0.16 -4.11 10.04 22.56 0.23 -3.88 15 17 C 0.19 6.22 6.81 38.34 0.26 6.48 15 18 N -0.85 -23.43 9.08 -50.70 -0.46 -23.89 15 19 H 0.01 0.39 8.06 -2.39 -0.02 0.37 15 20 H 0.07 3.08 6.91 -2.39 -0.02 3.07 15 21 H 0.07 2.51 8.11 -2.39 -0.02 2.49 15 22 H -0.04 -2.40 8.06 -2.39 -0.02 -2.42 15 23 H -0.01 -0.86 8.06 -2.39 -0.02 -0.88 15 24 H 0.26 15.53 8.31 -92.71 -0.77 14.76 15 25 H 0.16 4.39 8.06 -2.91 -0.02 4.36 15 26 H 0.17 2.64 8.06 -2.91 -0.02 2.62 15 27 H 0.17 2.84 8.06 -2.91 -0.02 2.82 15 28 H 0.41 12.63 8.15 -92.71 -0.76 11.88 15 29 H 0.41 7.81 8.86 -92.71 -0.82 6.99 15 Total: -1.00 -73.31 253.78 1.29 -72.03 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -0.41 Total: 16.12 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 4.60 Total: -2.80 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -4.93 Total: -132.22 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -73.31 1.29 -72.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833131.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.933 kcal (2) G-P(sol) polarization free energy of solvation -73.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds