Wall clock time and date at job start Mon Mar 30 2020 02:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46892 * 111.00144 * 2 1 4 4 C 1.50698 * 109.47006 * 66.04459 * 3 2 1 5 5 H 1.07998 * 120.00259 * 0.02562 * 4 3 2 6 6 C 1.37887 * 120.00167 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99988 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99861 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47261 * 89.99812 * 8 6 4 10 10 H 1.48502 * 109.47061 * 209.99982 * 8 6 4 11 11 H 1.48500 * 109.47136 * 329.99689 * 8 6 4 12 12 C 1.39504 * 111.00061 * 236.04819 * 2 1 3 13 13 C 1.39229 * 120.88503 * 63.95441 * 12 2 1 14 14 C 1.38047 * 119.14646 * 179.97438 * 13 12 2 15 15 N 1.31939 * 120.97498 * 359.97438 * 14 13 12 16 16 C 1.32012 * 121.94829 * 0.02562 * 15 14 13 17 17 C 1.38486 * 120.73751 * 0.25595 * 16 15 14 18 18 N 1.40071 * 120.51757 * 179.71886 * 17 16 15 19 19 H 1.09011 * 109.46954 * 183.95055 * 1 2 3 20 20 H 1.08992 * 109.47622 * 303.95172 * 1 2 3 21 21 H 1.09004 * 109.47062 * 63.95563 * 1 2 3 22 22 H 1.08997 * 109.47730 * 186.04938 * 3 2 1 23 23 H 1.08997 * 109.47266 * 306.04771 * 3 2 1 24 24 H 0.96997 * 120.00193 * 180.02562 * 7 6 4 25 25 H 1.08003 * 120.42178 * 0.02562 * 13 12 2 26 26 H 1.08001 * 119.51150 * 179.97438 * 14 13 12 27 27 H 1.08002 * 119.62630 * 179.97438 * 16 15 14 28 28 H 0.96997 * 120.00058 * 0.02562 * 18 17 16 29 29 H 0.96994 * 119.99499 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6369 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0267 3.3495 1.5285 7 7 1.7143 3.9389 2.6618 8 14 2.9987 4.2766 0.2304 9 1 2.0613 4.9803 -0.6813 10 1 3.8854 5.2683 0.8904 11 1 3.8223 3.3183 -0.5497 12 6 1.9689 -0.7274 -1.0803 13 6 1.7352 -0.3145 -2.3893 14 6 2.2474 -1.0612 -3.4314 15 7 2.9511 -2.1535 -3.2024 16 6 3.1973 -2.5821 -1.9783 17 6 2.7150 -1.8944 -0.8772 18 7 2.9740 -2.3566 0.4195 19 1 -0.3633 -1.0253 0.0708 20 1 -0.3634 0.5739 0.8524 21 1 -0.3633 0.4512 -0.9233 22 1 3.0797 1.3444 -0.1083 23 1 1.5611 1.9273 -0.8309 24 1 1.9882 4.8552 2.8236 25 1 1.1614 0.5789 -2.5868 26 1 2.0693 -0.7466 -4.4491 27 1 3.7774 -3.4816 -1.8341 28 1 3.4951 -3.1639 0.5515 29 1 2.6321 -1.8692 1.1852 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020370444.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:38 Heat of formation + Delta-G solvation = 22.895464 kcal Electronic energy + Delta-G solvation = -13339.959750 eV Core-core repulsion = 11069.148171 eV Total energy + Delta-G solvation = -2270.811579 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.33190 -38.20458 -35.71942 -34.69787 -31.92024 -30.10499 -29.48378 -26.88363 -24.57861 -23.45504 -21.98247 -19.20577 -18.30196 -17.82273 -17.38655 -16.61988 -15.90234 -15.72430 -15.15700 -14.92169 -14.73445 -14.51575 -14.31679 -13.43637 -13.04068 -12.99528 -12.68285 -12.32328 -12.05258 -11.87365 -11.53883 -10.83060 -10.49087 -10.26058 -9.34079 -8.47556 -8.31529 -6.35075 0.26750 0.54039 1.31343 1.34044 1.43732 2.30748 2.95494 2.97040 3.02203 3.09532 3.78479 4.06552 4.17522 4.28594 4.53740 4.59475 4.75152 4.80408 4.85114 4.90802 5.09626 5.31921 5.49734 5.70401 5.90974 6.21867 6.45224 6.70588 6.75138 7.06264 7.16766 7.28499 8.84208 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.039435 B = 0.009730 C = 0.008992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.856685 B = 2876.923692 C = 3113.081803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.499 5.499 3 C 0.183 3.817 4 C -0.516 4.516 5 H 0.048 0.952 6 C 0.016 3.984 7 N -0.942 5.942 8 Si 0.938 3.062 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.258 1.258 12 C 0.034 3.966 13 C -0.163 4.163 14 C 0.035 3.965 15 N -0.467 5.467 16 C 0.021 3.979 17 C 0.183 3.817 18 N -0.850 5.850 19 H 0.071 0.929 20 H 0.062 0.938 21 H 0.027 0.973 22 H 0.018 0.982 23 H -0.008 1.008 24 H 0.268 0.732 25 H 0.129 0.871 26 H 0.172 0.828 27 H 0.180 0.820 28 H 0.410 0.590 29 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 -10.854 -9.216 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.220 5.220 3 C 0.057 3.943 4 C -0.554 4.554 5 H 0.066 0.934 6 C -0.182 4.182 7 N -0.582 5.582 8 Si 0.762 3.238 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.182 1.182 12 C -0.073 4.073 13 C -0.185 4.185 14 C -0.124 4.124 15 N -0.176 5.176 16 C -0.143 4.143 17 C 0.072 3.928 18 N -0.389 5.389 19 H 0.090 0.910 20 H 0.081 0.919 21 H 0.046 0.954 22 H 0.036 0.964 23 H 0.010 0.990 24 H 0.077 0.923 25 H 0.147 0.853 26 H 0.189 0.811 27 H 0.197 0.803 28 H 0.241 0.759 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.204 -11.383 -9.378 14.912 hybrid contribution -0.307 1.675 0.361 1.741 sum 1.897 -9.707 -9.017 13.384 Atomic orbital electron populations 1.22249 0.85759 1.01371 1.00710 1.59254 1.08717 1.14885 1.39122 1.19928 0.94585 0.84596 0.95169 1.21180 1.35101 0.97462 1.01636 0.93418 1.25705 0.96746 0.98377 0.97400 1.70014 1.48284 1.13918 1.26010 0.85848 0.79468 0.78878 0.79585 1.18979 1.20555 1.18182 1.19101 1.02053 0.95953 0.90166 1.22620 1.01050 1.01247 0.93599 1.22558 0.97936 0.92242 0.99701 1.67519 1.12456 1.13982 1.23598 1.22529 1.03810 1.02052 0.85887 1.18947 0.93376 0.92112 0.88344 1.42373 1.61245 1.31595 1.03708 0.91034 0.91949 0.95441 0.96369 0.99030 0.92314 0.85349 0.81053 0.80332 0.75943 0.76337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.70 9.21 127.69 1.18 2.87 15 2 N -0.50 -20.05 4.01 -723.22 -2.90 -22.96 15 3 C 0.18 8.67 3.39 85.56 0.29 8.96 15 4 C -0.52 -28.86 9.01 25.60 0.23 -28.63 15 5 H 0.05 2.93 7.37 -2.91 -0.02 2.91 15 6 C 0.02 0.91 5.47 84.66 0.46 1.37 15 7 N -0.94 -57.49 13.96 21.45 0.30 -57.19 15 8 Si 0.94 43.65 27.47 68.60 1.88 45.53 15 9 H -0.26 -11.79 7.11 99.48 0.71 -11.08 15 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 15 11 H -0.26 -11.52 6.54 99.48 0.65 -10.87 15 12 C 0.03 1.21 4.71 38.59 0.18 1.39 15 13 C -0.16 -5.26 8.77 22.46 0.20 -5.06 15 14 C 0.03 1.00 11.17 84.63 0.95 1.94 15 15 N -0.47 -13.81 10.36 -195.60 -2.03 -15.84 15 16 C 0.02 0.56 11.05 84.72 0.94 1.49 15 17 C 0.18 5.55 6.81 38.31 0.26 5.81 15 18 N -0.85 -21.71 9.11 -50.71 -0.46 -22.17 15 19 H 0.07 2.29 8.14 -2.38 -0.02 2.27 15 20 H 0.06 2.58 6.76 -2.39 -0.02 2.56 15 21 H 0.03 0.95 7.42 -2.39 -0.02 0.93 15 22 H 0.02 0.90 7.12 -2.39 -0.02 0.88 15 23 H -0.01 -0.37 6.98 -2.39 -0.02 -0.39 15 24 H 0.27 15.27 8.31 -92.71 -0.77 14.50 15 25 H 0.13 4.03 7.30 -2.91 -0.02 4.01 15 26 H 0.17 3.86 8.06 -2.91 -0.02 3.84 15 27 H 0.18 3.57 8.06 -2.91 -0.02 3.54 15 28 H 0.41 7.38 8.86 -92.71 -0.82 6.55 15 29 H 0.41 11.82 8.22 -92.71 -0.76 11.06 15 Total: -1.00 -64.81 247.84 1.01 -63.80 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -0.47 Total: 18.67 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 4.68 Total: -9.84 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -5.09 Total: -118.16 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.53 kcal Total: -64.81 1.01 -63.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020370444.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.695 kcal (2) G-P(sol) polarization free energy of solvation -64.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds