Wall clock time and date at job start Mon Mar 30 2020 02:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30523 * 1 3 3 Si 1.86803 * 120.00219 * 2 1 4 4 H 1.48503 * 109.46846 * 270.00126 * 3 2 1 5 5 H 1.48506 * 109.46952 * 29.99769 * 3 2 1 6 6 H 1.48493 * 109.47259 * 149.99864 * 3 2 1 7 7 C 1.40357 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00513 * 179.97438 * 7 2 1 9 9 C 1.41690 * 119.99777 * 0.02562 * 7 2 1 10 10 O 1.21843 * 120.00192 * 359.97438 * 9 7 2 11 11 C 1.47548 * 120.00247 * 180.02562 * 9 7 2 12 12 C 1.40011 * 120.06786 * 359.97359 * 11 9 7 13 13 C 1.37656 * 120.00277 * 179.76658 * 12 11 9 14 14 C 1.39033 * 120.14324 * 0.51229 * 13 12 11 15 15 O 1.35725 * 119.93019 * 179.76353 * 14 13 12 16 16 C 1.39685 * 120.14428 * 359.48679 * 14 13 12 17 17 O 1.35963 * 120.00172 * 180.27632 * 16 14 13 18 18 C 1.38013 * 119.99231 * 0.25631 * 16 14 13 19 19 H 0.97002 * 119.99568 * 359.97438 * 1 2 3 20 20 H 1.08002 * 120.00309 * 0.02758 * 12 11 9 21 21 H 1.07998 * 119.93301 * 180.27792 * 13 12 11 22 22 H 0.96696 * 114.00142 * 269.72446 * 15 14 13 23 23 H 0.96700 * 113.99924 * 90.00087 * 17 16 14 24 24 H 1.07995 * 120.06975 * 179.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.4868 2.0464 -1.4001 5 1 1.4367 2.6527 0.7000 6 1 3.5368 1.4402 0.7000 7 6 2.0070 -1.2155 0.0005 8 1 3.0870 -1.2156 0.0001 9 6 1.2986 -2.4426 0.0005 10 8 0.0801 -2.4426 0.0005 11 6 2.0362 -3.7204 0.0017 12 6 3.4363 -3.7222 0.0022 13 6 4.1232 -4.9151 0.0081 14 6 3.4296 -6.1201 0.0029 15 8 4.1112 -7.2938 0.0039 16 6 2.0328 -6.1255 0.0023 17 8 1.3575 -7.3055 0.0028 18 6 1.3383 -4.9328 0.0017 19 1 -0.4849 0.8401 0.0004 20 1 3.9776 -2.7876 0.0022 21 1 5.2031 -4.9151 0.0131 22 1 4.3091 -7.6345 -0.8792 23 1 1.1618 -7.6463 0.8864 24 1 0.2583 -4.9355 0.0009 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034454667.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:07 Heat of formation + Delta-G solvation = -133.389708 kcal Electronic energy + Delta-G solvation = -12864.817394 eV Core-core repulsion = 10321.384273 eV Total energy + Delta-G solvation = -2543.433121 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 208.057 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.05626 -38.99269 -37.88354 -36.85312 -34.82206 -31.24058 -30.94243 -28.46491 -24.56466 -23.52785 -21.72486 -19.58706 -19.31668 -18.10016 -17.43915 -16.82452 -16.47290 -16.06488 -15.16938 -14.94235 -14.74779 -14.39491 -13.83185 -13.35888 -13.09426 -12.90608 -12.59552 -12.38393 -12.25078 -12.02532 -11.12972 -11.01411 -9.84219 -9.67984 -9.40048 -8.38292 -7.12254 -0.05250 0.30565 1.38666 1.39705 1.57267 2.06941 2.20589 2.67064 3.10377 3.36004 3.68341 3.96518 4.14847 4.40409 4.48625 4.83369 4.95497 5.13093 5.27353 5.32606 5.62522 5.76010 5.94461 6.63583 6.65750 6.74966 6.90250 8.19978 8.45242 Molecular weight = 208.06amu Principal moments of inertia in cm(-1) A = 0.057306 B = 0.008382 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.486872 B = 3339.628054 C = 3813.128594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.020 3.980 3 Si 0.999 3.001 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.242 1.242 7 C -0.536 4.536 8 H 0.103 0.897 9 C 0.356 3.644 10 O -0.600 6.600 11 C -0.131 4.131 12 C -0.084 4.084 13 C -0.129 4.129 14 C 0.084 3.916 15 O -0.493 6.493 16 C 0.068 3.932 17 O -0.499 6.499 18 C -0.123 4.123 19 H 0.283 0.717 20 H 0.148 0.852 21 H 0.168 0.832 22 H 0.409 0.591 23 H 0.405 0.595 24 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.332 -6.576 0.009 12.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.200 4.200 3 Si 0.817 3.183 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.164 1.164 7 C -0.566 4.566 8 H 0.121 0.879 9 C 0.257 3.743 10 O -0.495 6.495 11 C -0.132 4.132 12 C -0.102 4.102 13 C -0.147 4.147 14 C 0.038 3.962 15 O -0.305 6.305 16 C 0.023 3.977 17 O -0.311 6.311 18 C -0.142 4.142 19 H 0.094 0.906 20 H 0.165 0.835 21 H 0.185 0.815 22 H 0.268 0.732 23 H 0.263 0.737 24 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.595 -6.464 0.009 11.569 hybrid contribution -0.380 0.436 -0.010 0.578 sum 9.215 -6.028 -0.001 11.012 Atomic orbital electron populations 1.70112 1.10186 1.30072 1.31141 1.27373 0.95521 1.05875 0.91182 0.84989 0.79136 0.74288 0.79861 1.18213 1.19499 1.16445 1.21490 0.96478 0.91919 1.46704 0.87940 1.18843 0.88296 0.88376 0.78782 1.90465 1.17252 1.89683 1.52118 1.21523 0.95771 0.95795 1.00113 1.21568 0.92237 0.99325 0.97051 1.21585 1.01784 0.90095 1.01257 1.18960 0.88201 0.86678 1.02332 1.84644 1.75231 1.35367 1.35302 1.18734 0.89860 0.85084 1.04051 1.84706 1.76485 1.34800 1.35138 1.21475 1.00194 0.91790 1.00777 0.90628 0.83488 0.81459 0.73216 0.73665 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.38 11.73 21.89 0.26 -46.12 14 2 C 0.02 1.05 5.50 85.40 0.47 1.52 14 3 Si 1.00 38.07 29.56 68.60 2.03 40.10 14 4 H -0.26 -9.34 7.11 99.48 0.71 -8.63 14 5 H -0.27 -9.95 7.11 99.48 0.71 -9.25 14 6 H -0.24 -8.40 7.11 99.48 0.71 -7.69 14 7 C -0.54 -29.28 8.85 23.64 0.21 -29.07 14 8 H 0.10 4.83 6.01 -2.91 -0.02 4.81 14 9 C 0.36 20.96 6.90 25.58 0.18 21.14 14 10 O -0.60 -40.69 14.88 -4.81 -0.07 -40.76 14 11 C -0.13 -6.25 5.89 -19.99 -0.12 -6.37 14 12 C -0.08 -3.15 9.43 22.56 0.21 -2.94 14 13 C -0.13 -3.89 9.97 22.32 0.22 -3.66 14 14 C 0.08 2.60 6.74 22.81 0.15 2.76 14 15 O -0.49 -12.13 13.27 -76.57 -1.02 -13.15 14 16 C 0.07 2.45 6.71 22.57 0.15 2.60 14 17 O -0.50 -15.57 13.28 -79.23 -1.05 -16.62 14 18 C -0.12 -5.52 9.52 22.62 0.22 -5.30 14 19 H 0.28 14.87 8.29 -92.71 -0.77 14.10 14 20 H 0.15 5.13 6.19 -2.91 -0.02 5.11 14 21 H 0.17 3.69 8.06 -2.91 -0.02 3.66 14 22 H 0.41 6.26 9.06 -74.06 -0.67 5.58 14 23 H 0.41 8.88 9.06 -74.06 -0.67 8.21 14 24 H 0.11 5.28 7.65 -2.91 -0.02 5.26 14 Total: -1.00 -76.49 227.87 1.77 -74.72 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -0.07 Total: 21.17 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 1.69 Total: -19.34 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.26 Total: -46.12 kcal Atomic # 8 Polarization: -68.39 SS G_CDS: -2.14 Total: -70.53 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -76.49 1.77 -74.72 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034454667.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.666 kcal (2) G-P(sol) polarization free energy of solvation -76.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds