Wall clock time and date at job start Mon Mar 30 2020 02:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48503 * 109.46586 * 269.99795 * 3 2 1 5 5 H 1.48496 * 109.47489 * 29.99351 * 3 2 1 6 6 H 1.48495 * 109.47395 * 149.99650 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.52094 * 56.33153 * 12 11 10 14 14 C 1.54832 * 110.57995 * 293.54399 * 12 11 10 15 15 C 1.56201 * 103.68372 * 241.45310 * 14 12 11 16 16 H 1.08995 * 116.29122 * 163.14174 * 15 14 12 17 17 C 1.53356 * 104.07432 * 292.47866 * 15 14 12 18 18 C 1.31800 * 108.42749 * 70.08688 * 17 15 14 19 19 C 1.56195 * 110.58031 * 179.28131 * 12 11 10 20 20 H 1.09003 * 116.29231 * 314.53274 * 19 12 11 21 21 C 1.57256 * 100.39977 * 82.22346 * 19 12 11 22 22 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 24 24 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 25 25 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 26 26 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 27 27 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 28 28 H 1.09000 * 110.58329 * 0.02562 * 14 12 11 29 29 H 1.09002 * 110.58133 * 122.90188 * 14 12 11 30 30 H 1.07998 * 125.78987 * 250.08545 * 17 15 14 31 31 H 1.07996 * 125.78949 * 179.97438 * 18 17 15 32 32 H 1.09001 * 112.52213 * 300.91811 * 21 19 12 33 33 H 1.08995 * 112.52737 * 173.05141 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 2.5302 -6.0431 0.0006 13 1 3.2057 -5.9477 0.8507 14 6 3.3257 -6.0592 -1.3277 15 6 2.9875 -7.4541 -1.9440 16 1 3.2046 -7.5786 -3.0048 17 6 3.6540 -8.4542 -0.9914 18 6 2.9924 -8.4483 0.1485 19 6 1.8124 -7.4302 0.0183 20 1 0.9878 -7.5382 0.7230 21 6 1.4829 -7.5989 -1.5101 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5572 -0.8896 24 1 0.6240 -2.5568 0.8903 25 1 2.8405 -3.5487 0.7819 26 1 0.8801 -4.9818 0.8897 27 1 0.8807 -4.9813 -0.8902 28 1 2.9895 -5.2576 -1.9854 29 1 4.3952 -5.9745 -1.1349 30 1 4.5189 -9.0606 -1.2164 31 1 3.2229 -9.0492 1.0157 32 1 0.8582 -6.7924 -1.8940 33 1 1.0740 -8.5820 -1.7431 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035014999.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:10 Heat of formation + Delta-G solvation = 23.777170 kcal Electronic energy + Delta-G solvation = -13283.441599 eV Core-core repulsion = 11116.208597 eV Total energy + Delta-G solvation = -2167.233002 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.36973 -35.28271 -32.61654 -30.57408 -28.77029 -27.76888 -26.32586 -23.53821 -21.36584 -20.44181 -19.55770 -17.79700 -16.52458 -16.08757 -15.31242 -14.60710 -14.37356 -13.73970 -12.91348 -12.53534 -12.43842 -11.85479 -11.73784 -11.32740 -11.15214 -11.09053 -10.91122 -10.75783 -10.68677 -10.43201 -10.26040 -10.04158 -9.70204 -9.14318 -8.82079 -8.45551 -7.23354 -6.01200 -4.03036 2.32555 3.33609 3.39100 3.43128 4.44337 4.59096 4.67961 4.76810 5.03355 5.31950 5.34809 5.42158 5.45726 5.56375 5.70929 5.82437 5.84918 5.98364 6.09164 6.18272 6.25802 6.32985 6.38758 6.44517 6.63625 6.75636 7.04505 7.29215 7.45797 7.81390 8.16027 8.44034 8.65882 9.06671 9.61865 11.10018 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.071642 B = 0.005893 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.739333 B = 4750.660578 C = 4874.308530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.689 5.689 11 C 0.067 3.933 12 C -0.083 4.083 13 H 0.067 0.933 14 C -0.102 4.102 15 C -0.083 4.083 16 H 0.094 0.906 17 C -0.169 4.169 18 C -0.170 4.170 19 C -0.074 4.074 20 H 0.097 0.903 21 C -0.120 4.120 22 H 0.261 0.739 23 H 0.027 0.973 24 H -0.015 1.015 25 H 0.327 0.673 26 H 0.016 0.984 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.434 -15.273 -1.160 15.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.319 5.319 11 C -0.063 4.063 12 C -0.102 4.102 13 H 0.086 0.914 14 C -0.140 4.140 15 C -0.101 4.101 16 H 0.112 0.888 17 C -0.186 4.186 18 C -0.188 4.188 19 C -0.093 4.093 20 H 0.115 0.885 21 C -0.158 4.158 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.003 0.997 25 H 0.143 0.857 26 H 0.034 0.966 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.097 0.903 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.359 -15.107 -1.844 15.831 hybrid contribution 0.143 0.865 1.023 1.348 sum 4.502 -14.242 -0.821 14.959 Atomic orbital electron populations 1.69963 1.06097 1.26749 1.51038 1.24996 0.94872 0.99371 0.95386 0.86479 0.79674 0.83010 0.78120 1.20616 1.21315 1.19865 1.21205 0.93513 0.90298 1.50175 0.91988 1.19543 0.90629 0.87468 0.95661 1.60642 1.21158 1.01283 1.48790 1.21915 0.94850 0.89969 0.99547 1.22328 0.96931 0.92821 0.98103 0.91445 1.22644 0.99428 0.95398 0.96508 1.22959 0.94603 0.94926 0.97619 0.88816 1.24056 0.99700 0.98455 0.96430 1.24668 0.98199 0.98211 0.97684 1.23499 0.95367 0.93746 0.96647 0.88496 1.24009 0.95993 1.01186 0.94587 0.92940 0.95528 0.99737 0.85716 0.96626 0.91738 0.89938 0.92203 0.86152 0.86051 0.90288 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.82 9.32 -34.44 -0.32 -15.14 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.20 5.44 -4.97 -0.03 5.17 16 10 N -0.69 -15.06 6.24 -115.05 -0.72 -15.78 16 11 C 0.07 1.22 4.89 -3.82 -0.02 1.20 16 12 C -0.08 -1.24 2.55 -87.94 -0.22 -1.46 16 13 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 14 C -0.10 -1.49 5.73 -24.05 -0.14 -1.63 16 15 C -0.08 -1.02 5.20 -86.40 -0.45 -1.47 16 16 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.17 -1.95 10.14 -34.86 -0.35 -2.30 16 18 C -0.17 -1.99 10.28 -33.23 -0.34 -2.33 16 19 C -0.07 -0.94 4.80 -84.77 -0.41 -1.35 16 20 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 21 C -0.12 -1.48 6.63 -22.10 -0.15 -1.63 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 24 H -0.02 -0.43 8.14 -51.93 -0.42 -0.85 16 25 H 0.33 6.90 8.72 -39.29 -0.34 6.56 16 26 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 1.19 7.02 -51.93 -0.36 0.83 16 28 H 0.08 1.36 7.69 -51.93 -0.40 0.96 16 29 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.08 1.03 7.01 -51.93 -0.36 0.66 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 268.52 15.07 4.05 4.05 Total: -1.00 -29.91 268.52 -8.72 -38.62 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.24 Total: 2.14 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -2.52 Total: -19.45 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.02 Total: -42.30 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.91 -8.72 -38.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035014999.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.401 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds