Wall clock time and date at job start Mon Mar 30 2020 02:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48503 * 109.46586 * 269.99795 * 3 2 1 5 5 H 1.48496 * 109.47489 * 29.99351 * 3 2 1 6 6 H 1.48495 * 109.47395 * 149.99650 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.52094 * 56.33153 * 12 11 10 14 14 C 1.54832 * 110.57995 * 293.54399 * 12 11 10 15 15 C 1.56201 * 103.68372 * 241.45310 * 14 12 11 16 16 H 1.08995 * 116.29122 * 163.14174 * 15 14 12 17 17 C 1.53356 * 104.07432 * 292.47866 * 15 14 12 18 18 C 1.31800 * 108.42749 * 70.08688 * 17 15 14 19 19 C 1.56195 * 110.58031 * 179.28131 * 12 11 10 20 20 H 1.09003 * 116.29231 * 314.53274 * 19 12 11 21 21 C 1.57256 * 100.39977 * 82.22346 * 19 12 11 22 22 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 24 24 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 25 25 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 26 26 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 27 27 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 28 28 H 1.09000 * 110.58329 * 0.02562 * 14 12 11 29 29 H 1.09002 * 110.58133 * 122.90188 * 14 12 11 30 30 H 1.07998 * 125.78987 * 250.08545 * 17 15 14 31 31 H 1.07996 * 125.78949 * 179.97438 * 18 17 15 32 32 H 1.09001 * 112.52213 * 300.91811 * 21 19 12 33 33 H 1.08995 * 112.52737 * 173.05141 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 2.5302 -6.0431 0.0006 13 1 3.2057 -5.9477 0.8507 14 6 3.3257 -6.0592 -1.3277 15 6 2.9875 -7.4541 -1.9440 16 1 3.2046 -7.5786 -3.0048 17 6 3.6540 -8.4542 -0.9914 18 6 2.9924 -8.4483 0.1485 19 6 1.8124 -7.4302 0.0183 20 1 0.9878 -7.5382 0.7230 21 6 1.4829 -7.5989 -1.5101 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5572 -0.8896 24 1 0.6240 -2.5568 0.8903 25 1 2.8405 -3.5487 0.7819 26 1 0.8801 -4.9818 0.8897 27 1 0.8807 -4.9813 -0.8902 28 1 2.9895 -5.2576 -1.9854 29 1 4.3952 -5.9745 -1.1349 30 1 4.5189 -9.0606 -1.2164 31 1 3.2229 -9.0492 1.0157 32 1 0.8582 -6.7924 -1.8940 33 1 1.0740 -8.5820 -1.7431 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035014999.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:10 Heat of formation + Delta-G solvation = 5.426707 kcal Electronic energy + Delta-G solvation = -13284.237335 eV Core-core repulsion = 11116.208597 eV Total energy + Delta-G solvation = -2168.028738 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.43324 -37.08211 -34.67983 -32.02419 -29.91326 -28.96786 -28.07126 -25.18583 -23.36615 -21.54368 -20.71724 -18.79450 -18.51789 -17.31015 -16.71617 -16.40252 -16.06347 -15.23899 -14.69566 -14.21769 -13.69804 -13.45396 -13.23424 -12.90991 -12.65537 -12.62393 -12.18396 -12.15445 -12.08521 -11.88187 -11.62681 -11.53631 -11.34234 -10.89250 -10.67067 -9.77997 -9.11826 -8.23843 -6.35583 1.40601 1.42191 1.42910 1.54202 2.39430 3.09298 3.44779 3.57472 3.67537 3.92985 4.11819 4.22543 4.35100 4.47811 4.56154 4.62597 4.73123 4.79484 4.83919 5.04609 5.08162 5.12848 5.19650 5.25835 5.33408 5.36020 5.43218 5.58484 5.61681 6.00661 6.15042 6.43668 6.71134 6.87654 7.35663 8.88005 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.071642 B = 0.005893 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.739333 B = 4750.660578 C = 4874.308530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.208 3.792 10 N -0.685 5.685 11 C 0.070 3.930 12 C -0.078 4.078 13 H 0.067 0.933 14 C -0.103 4.103 15 C -0.081 4.081 16 H 0.107 0.893 17 C -0.166 4.166 18 C -0.171 4.171 19 C -0.075 4.075 20 H 0.103 0.897 21 C -0.121 4.121 22 H 0.266 0.734 23 H -0.002 1.002 24 H -0.042 1.042 25 H 0.333 0.667 26 H 0.013 0.987 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.064 0.936 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 -16.077 -1.106 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.080 3.920 10 N -0.315 5.315 11 C -0.059 4.059 12 C -0.096 4.096 13 H 0.085 0.915 14 C -0.141 4.141 15 C -0.099 4.099 16 H 0.125 0.875 17 C -0.183 4.183 18 C -0.189 4.189 19 C -0.094 4.094 20 H 0.121 0.879 21 C -0.159 4.159 22 H 0.074 0.926 23 H 0.016 0.984 24 H -0.024 1.024 25 H 0.149 0.851 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.083 0.917 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.779 -15.937 -1.790 17.047 hybrid contribution -0.335 1.078 0.995 1.505 sum 5.445 -14.859 -0.795 15.845 Atomic orbital electron populations 1.70093 1.07887 1.28075 1.51491 1.25990 0.95810 1.03509 0.94477 0.85288 0.78482 0.77748 0.78503 1.19788 1.20579 1.18695 1.21553 0.93816 0.91428 1.50713 0.91731 1.19198 0.90663 0.89101 0.92990 1.60527 1.20381 1.01554 1.49057 1.21964 0.95663 0.89373 0.98945 1.22242 0.96184 0.92836 0.98385 0.91494 1.22585 0.99218 0.96333 0.95932 1.22998 0.94620 0.93614 0.98632 0.87450 1.24221 1.00154 0.98133 0.95840 1.24777 0.97447 0.98095 0.98595 1.23534 0.96096 0.92547 0.97217 0.87874 1.24021 0.96013 1.01590 0.94234 0.92561 0.98406 1.02396 0.85058 0.96919 0.92551 0.92506 0.92085 0.83985 0.84110 0.91706 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.59 13.29 21.45 0.28 -57.31 16 2 C 0.00 0.01 5.46 84.66 0.46 0.48 16 3 Si 0.98 44.90 29.54 68.60 2.03 46.93 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.54 -31.46 9.32 25.60 0.24 -31.22 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 9 C 0.21 11.60 5.44 85.55 0.47 12.06 16 10 N -0.69 -30.70 6.24 -517.92 -3.23 -33.94 16 11 C 0.07 2.60 4.89 86.30 0.42 3.02 16 12 C -0.08 -2.27 2.55 -9.06 -0.02 -2.30 16 13 H 0.07 1.98 8.08 -2.39 -0.02 1.96 16 14 C -0.10 -2.94 5.73 32.33 0.19 -2.75 16 15 C -0.08 -1.83 5.20 -8.06 -0.04 -1.87 16 16 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 17 C -0.17 -3.32 10.14 25.79 0.26 -3.05 16 18 C -0.17 -3.52 10.28 26.84 0.28 -3.24 16 19 C -0.08 -1.81 4.80 -7.01 -0.03 -1.84 16 20 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 21 C -0.12 -2.82 6.63 33.59 0.22 -2.59 16 22 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 23 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 24 H -0.04 -2.49 8.14 -2.39 -0.02 -2.51 16 25 H 0.33 14.23 8.72 -89.69 -0.78 13.45 16 26 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 2.17 7.02 -2.39 -0.02 2.15 16 28 H 0.06 1.90 7.69 -2.39 -0.02 1.88 16 29 H 0.06 1.70 8.07 -2.39 -0.02 1.68 16 30 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.06 1.68 7.01 -2.39 -0.02 1.66 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -64.10 268.52 1.80 -62.30 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.29 Total: 15.33 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 2.44 Total: -33.32 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -2.95 Total: -91.24 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.10 1.80 -62.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035014999.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.727 kcal (2) G-P(sol) polarization free energy of solvation -64.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds