Wall clock time and date at job start Mon Mar 30 2020 02:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.31087 * 121.84974 * 2 1 4 4 S 1.75768 * 109.79125 * 180.02562 * 3 2 1 5 5 C 1.76381 * 90.70943 * 359.97438 * 4 3 2 6 6 N 1.33234 * 141.35174 * 179.97438 * 5 4 3 7 7 C 1.32352 * 109.97309 * 179.97438 * 6 5 4 8 8 C 1.39441 * 107.84834 * 359.97438 * 7 6 5 9 9 C 1.39897 * 126.91922 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00196 * 180.02562 * 9 8 7 11 11 C 1.39820 * 119.99753 * 359.97438 * 9 8 7 12 12 N 1.31079 * 120.00114 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99816 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47068 * 90.00155 * 13 11 9 15 15 H 1.48497 * 109.47302 * 210.00505 * 13 11 9 16 16 H 1.48506 * 109.47419 * 330.00524 * 13 11 9 17 17 N 1.35172 * 109.11646 * 359.97438 * 5 4 3 18 18 H 1.09001 * 109.46820 * 90.03256 * 1 2 3 19 19 H 1.09005 * 109.47019 * 210.02209 * 1 2 3 20 20 H 1.08990 * 109.47712 * 330.02900 * 1 2 3 21 21 H 1.08000 * 125.10106 * 359.97438 * 3 2 1 22 22 H 1.08000 * 126.07548 * 179.97438 * 7 6 5 23 23 H 0.96997 * 119.99988 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1987 1.1135 0.0000 4 16 3.9176 0.7463 -0.0007 5 6 3.5705 -0.9830 -0.0002 6 7 4.1815 -2.1670 -0.0007 7 6 3.2835 -3.1392 0.0008 8 6 2.0185 -2.5526 0.0029 9 6 0.7856 -3.2137 0.0054 10 1 -0.1323 -2.6446 0.0064 11 6 0.7418 -4.6112 0.0056 12 7 1.8559 -5.3019 0.0038 13 14 -0.9044 -5.4940 0.0082 14 1 -1.3429 -5.7280 -1.3911 15 1 -0.7666 -6.7964 0.7082 16 1 -1.9127 -4.6593 0.7097 17 7 2.2312 -1.1657 0.0010 18 1 -0.3633 -0.0006 -1.0277 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3634 0.8901 0.5133 21 1 1.7758 2.1073 -0.0004 22 1 3.4932 -4.1986 0.0005 23 1 1.8254 -6.2714 0.0043 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036255508.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:20 Heat of formation + Delta-G solvation = 58.105484 kcal Electronic energy + Delta-G solvation = -11308.062510 eV Core-core repulsion = 9247.978866 eV Total energy + Delta-G solvation = -2060.083644 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.58686 -37.48184 -35.72077 -31.80432 -31.17039 -28.46524 -26.83635 -23.51329 -22.07126 -20.92311 -19.25796 -17.89738 -16.86690 -16.51140 -15.53620 -15.41863 -15.00139 -14.13263 -14.08748 -13.82544 -13.78193 -13.03202 -12.82895 -12.43695 -12.04361 -11.99793 -11.78057 -11.48004 -10.80042 -10.53719 -9.30342 -8.70874 -8.60194 -6.29949 0.40692 0.50987 1.16507 1.36168 1.39646 1.56492 1.81536 2.09186 2.35055 2.42778 3.20547 3.90771 4.35061 4.41811 4.65028 4.71314 4.87177 4.92371 5.06842 5.44017 5.58232 5.83274 6.26292 6.51453 6.70852 6.82057 7.53348 8.26843 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.048845 B = 0.011533 C = 0.009377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.104483 B = 2427.245198 C = 2985.205965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.084 3.916 3 C -0.247 4.247 4 S 0.112 5.888 5 C -0.012 4.012 6 N -0.475 5.475 7 C -0.150 4.150 8 C 0.171 3.829 9 C -0.448 4.448 10 H 0.097 0.903 11 C 0.024 3.976 12 N -0.823 5.823 13 Si 1.013 2.987 14 H -0.260 1.260 15 H -0.266 1.266 16 H -0.251 1.251 17 N -0.451 5.451 18 H 0.088 0.912 19 H 0.062 0.938 20 H 0.119 0.881 21 H 0.227 0.773 22 H 0.186 0.814 23 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.527 7.400 0.025 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.026 4.026 3 C -0.384 4.384 4 S 0.357 5.643 5 C -0.369 4.369 6 N -0.197 5.197 7 C -0.301 4.301 8 C 0.061 3.939 9 C -0.482 4.482 10 H 0.115 0.885 11 C -0.191 4.191 12 N -0.450 5.450 13 Si 0.832 3.168 14 H -0.185 1.185 15 H -0.191 1.191 16 H -0.174 1.174 17 N -0.139 5.139 18 H 0.106 0.894 19 H 0.081 0.919 20 H 0.138 0.862 21 H 0.243 0.757 22 H 0.202 0.798 23 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.397 7.815 0.028 9.498 hybrid contribution -1.931 -1.486 -0.026 2.437 sum -7.328 6.329 0.002 9.683 Atomic orbital electron populations 1.20808 0.85270 1.04875 1.04254 1.19692 0.97391 0.83528 1.01950 1.24877 0.94674 1.02128 1.16719 1.83352 1.05710 0.88201 1.87003 1.25813 0.84165 1.00745 1.26168 1.69568 1.35334 0.96653 1.18182 1.23434 0.87210 0.98162 1.21250 1.19686 0.97408 0.76976 0.99838 1.19008 0.91310 0.92470 1.45427 0.88487 1.26944 1.03185 0.97428 0.91557 1.69724 1.30524 1.09574 1.35140 0.84724 0.75040 0.77397 0.79656 1.18465 1.19081 1.17411 1.43763 1.06795 1.05887 1.57451 0.89377 0.91931 0.86245 0.75686 0.79791 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.75 9.89 71.23 0.70 -2.04 14 2 C 0.08 3.30 6.75 41.58 0.28 3.58 14 3 C -0.25 -8.06 10.81 67.69 0.73 -7.33 14 4 S 0.11 4.40 23.37 -56.49 -1.32 3.07 14 5 C -0.01 -0.64 8.92 179.41 1.60 0.96 14 6 N -0.48 -28.49 11.24 -193.23 -2.17 -30.66 14 7 C -0.15 -9.11 10.84 84.90 0.92 -8.19 14 8 C 0.17 9.77 6.94 38.48 0.27 10.04 14 9 C -0.45 -23.29 9.08 23.05 0.21 -23.08 14 10 H 0.10 4.54 5.77 -2.91 -0.02 4.52 14 11 C 0.02 1.17 5.49 85.19 0.47 1.63 14 12 N -0.82 -42.46 10.32 21.82 0.23 -42.24 14 13 Si 1.01 35.72 29.56 68.60 2.03 37.75 14 14 H -0.26 -8.83 7.11 99.48 0.71 -8.12 14 15 H -0.27 -9.01 7.11 99.48 0.71 -8.31 14 16 H -0.25 -8.32 7.11 99.48 0.71 -7.61 14 17 N -0.45 -23.24 3.22 -333.65 -1.07 -24.32 14 18 H 0.09 2.36 8.14 -2.39 -0.02 2.34 14 19 H 0.06 2.10 6.05 -2.38 -0.01 2.09 14 20 H 0.12 2.42 8.10 -2.39 -0.02 2.40 14 21 H 0.23 4.76 8.06 -2.91 -0.02 4.73 14 22 H 0.19 11.42 5.73 -2.91 -0.02 11.40 14 23 H 0.29 13.50 8.30 -92.71 -0.77 12.73 14 Total: -1.00 -68.74 217.90 4.11 -64.63 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 1.24 Total: 16.18 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 5.18 Total: -24.42 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -3.02 Total: -97.21 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.32 Total: 3.07 kcal Total: -68.74 4.11 -64.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036255508.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.733 kcal (2) G-P(sol) polarization free energy of solvation -68.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds