Wall clock time and date at job start Mon Mar 30 2020 02:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47016 * 2 1 4 4 C 1.53006 * 109.47392 * 119.99721 * 2 1 3 5 5 C 1.53007 * 109.46671 * 60.00366 * 4 2 1 6 6 C 1.53003 * 109.47039 * 59.99961 * 5 4 2 7 7 C 1.52995 * 109.47127 * 299.99747 * 6 5 4 8 8 C 1.47203 * 109.47208 * 300.00001 * 7 6 5 9 9 N 3.61161 * 43.77372 * 209.99806 * 2 1 3 10 10 C 1.50703 * 109.46875 * 180.02562 * 7 6 5 11 11 H 1.08000 * 119.99862 * 240.00212 * 10 7 6 12 12 C 1.37879 * 120.00047 * 60.00378 * 10 7 6 13 13 N 1.31517 * 119.99744 * 359.97438 * 12 10 7 14 14 Si 1.86792 * 119.99984 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47326 * 89.99841 * 14 12 10 16 16 H 1.48503 * 109.47051 * 209.99657 * 14 12 10 17 17 H 1.48494 * 109.47557 * 329.99815 * 14 12 10 18 18 C 1.53000 * 109.47096 * 60.00414 * 7 6 5 19 19 H 1.08999 * 109.47289 * 319.04866 * 1 2 3 20 20 H 1.08999 * 109.47260 * 79.05384 * 1 2 3 21 21 H 1.09006 * 109.47130 * 199.05319 * 1 2 3 22 22 H 1.09001 * 109.47356 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.46956 * 299.99681 * 3 2 1 24 24 H 1.09001 * 109.47448 * 60.00042 * 3 2 1 25 25 H 1.08992 * 109.47189 * 300.00222 * 4 2 1 26 26 H 1.08998 * 109.46779 * 179.97438 * 4 2 1 27 27 H 1.08998 * 109.46532 * 179.97438 * 5 4 2 28 28 H 1.09001 * 109.46830 * 299.99725 * 5 4 2 29 29 H 1.09001 * 109.47020 * 59.99952 * 6 5 4 30 30 H 1.08999 * 109.46368 * 179.97438 * 6 5 4 31 31 H 0.97003 * 119.99942 * 180.02562 * 13 12 10 32 32 H 1.08998 * 109.46673 * 179.97438 * 18 7 6 33 33 H 1.09001 * 109.47356 * 59.99608 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1638 1.2492 6 6 2.0401 -2.8850 -0.0001 7 6 1.5300 -2.1637 -1.2492 8 6 0.0580 -2.1638 -1.2492 9 7 -1.0779 -2.1639 -1.2492 10 6 2.0319 -2.8745 -2.4797 11 1 2.6529 -2.3499 -3.1908 12 6 1.6984 -4.1944 -2.6977 13 7 0.9426 -4.8333 -1.8315 14 14 2.3199 -5.0752 -4.2232 15 1 3.6281 -5.7130 -3.9281 16 1 1.3412 -6.1167 -4.6267 17 1 2.4845 -4.0962 -5.3275 18 6 2.0400 -0.7212 -1.2492 19 1 -0.3634 0.7761 0.6735 20 1 -0.3634 0.1951 -1.0089 21 1 -0.3634 -0.9714 0.3355 22 1 3.1299 1.4426 0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6767 -0.2074 2.1392 26 1 3.1300 -0.7215 1.2490 27 1 1.8938 -2.6777 2.1390 28 1 0.4400 -2.1638 1.2493 29 1 3.1301 -2.8849 0.0000 30 1 1.6771 -3.9127 0.0002 31 1 0.7082 -5.7621 -1.9846 32 1 1.6770 -0.2076 -2.1394 33 1 3.1300 -0.7212 -1.2492 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039116665.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:50 Heat of formation + Delta-G solvation = -7.554554 kcal Electronic energy + Delta-G solvation = -14393.728688 eV Core-core repulsion = 12225.137041 eV Total energy + Delta-G solvation = -2168.591648 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.94481 -36.52171 -35.44937 -33.30343 -31.91288 -28.09006 -27.02262 -26.82610 -23.53234 -22.27754 -20.07740 -18.48684 -16.95732 -16.65402 -15.89832 -15.54402 -14.82331 -14.68779 -14.29847 -14.08370 -13.65635 -13.25125 -13.07402 -12.96712 -12.77017 -12.65646 -12.46333 -12.44530 -11.98618 -11.89694 -11.64337 -11.55776 -11.39683 -10.98724 -10.65433 -10.52950 -10.35982 -8.13828 -6.33513 1.44145 1.46994 1.55397 2.37567 2.54467 2.60407 3.15281 3.88442 3.95140 4.04946 4.18928 4.47799 4.60317 4.63381 4.76639 4.82238 4.97163 4.98071 5.04061 5.07277 5.17662 5.25433 5.29246 5.38455 5.43059 5.53434 5.60884 5.65421 5.73870 5.80251 6.10719 6.24737 6.71955 7.37993 7.42069 8.86454 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.042441 B = 0.011627 C = 0.011348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.576728 B = 2407.513430 C = 2466.821697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.068 4.068 3 C -0.131 4.131 4 C -0.096 4.096 5 C -0.125 4.125 6 C -0.097 4.097 7 C 0.143 3.857 8 C 0.297 3.703 9 N -0.572 5.572 10 C -0.530 4.530 11 H 0.077 0.923 12 C 0.022 3.978 13 N -0.904 5.904 14 Si 0.955 3.045 15 H -0.265 1.265 16 H -0.296 1.296 17 H -0.266 1.266 18 C -0.083 4.083 19 H 0.061 0.939 20 H 0.029 0.971 21 H 0.050 0.950 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.262 0.738 32 H 0.047 0.953 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.578 8.149 4.655 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.068 4.068 3 C -0.188 4.188 4 C -0.134 4.134 5 C -0.163 4.163 6 C -0.136 4.136 7 C 0.140 3.860 8 C -0.016 4.016 9 N -0.251 5.251 10 C -0.569 4.569 11 H 0.095 0.905 12 C -0.180 4.180 13 N -0.541 5.541 14 Si 0.780 3.220 15 H -0.190 1.190 16 H -0.222 1.222 17 H -0.190 1.190 18 C -0.122 4.122 19 H 0.079 0.921 20 H 0.049 0.951 21 H 0.068 0.932 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.779 7.974 4.686 10.411 hybrid contribution 0.039 -1.115 -1.013 1.507 sum 4.818 6.860 3.673 9.152 Atomic orbital electron populations 1.22402 0.96846 1.01681 1.00223 1.20637 0.93956 0.96582 0.95666 1.21798 1.01683 0.93520 1.01775 1.21541 1.01275 0.93877 0.96673 1.21713 0.99080 0.97167 0.98327 1.21472 0.99831 1.00335 0.91962 1.16331 0.78430 0.94938 0.96338 1.30284 0.96085 0.87224 0.88008 1.80829 1.15402 1.14840 1.14046 1.21384 1.32364 0.96055 1.07114 0.90481 1.25783 0.94586 0.98497 0.99087 1.70001 1.36357 1.11183 1.36543 0.85585 0.78182 0.78168 0.80016 1.19032 1.22246 1.18992 1.21632 1.01349 0.92646 0.96552 0.92055 0.95146 0.93160 0.91101 0.93109 0.91770 0.91130 0.90096 0.91360 0.95029 0.91470 0.92149 0.92923 0.93385 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.55 6.79 71.98 0.49 -5.06 16 2 C -0.07 -2.12 0.77 -52.18 -0.04 -2.16 16 3 C -0.13 -3.08 8.39 71.98 0.60 -2.48 16 4 C -0.10 -2.75 4.73 30.60 0.14 -2.61 16 5 C -0.13 -4.46 5.58 30.60 0.17 -4.29 16 6 C -0.10 -4.12 4.48 30.59 0.14 -3.98 16 7 C 0.14 6.50 0.47 -54.73 -0.03 6.47 16 8 C 0.30 15.13 7.86 89.44 0.70 15.83 16 9 N -0.57 -30.93 16.97 20.01 0.34 -30.60 16 10 C -0.53 -26.49 7.99 25.60 0.20 -26.28 16 11 H 0.08 3.67 7.74 -2.91 -0.02 3.64 16 12 C 0.02 1.14 5.14 84.65 0.44 1.57 16 13 N -0.90 -50.15 10.41 21.45 0.22 -49.92 16 14 Si 0.95 41.54 29.54 68.60 2.03 43.57 16 15 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 16 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 18 C -0.08 -3.03 3.59 30.59 0.11 -2.92 16 19 H 0.06 1.89 7.99 -2.39 -0.02 1.87 16 20 H 0.03 1.19 7.17 -2.39 -0.02 1.17 16 21 H 0.05 2.09 3.24 -2.38 -0.01 2.08 16 22 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 25 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.03 1.27 5.56 -2.39 -0.01 1.26 16 29 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.06 3.02 6.07 -2.39 -0.01 3.00 16 31 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 33 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -59.43 253.36 6.60 -52.83 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.08 Total: 10.03 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 2.93 Total: -25.91 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: 0.56 Total: -80.52 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -59.43 6.60 -52.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039116665.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.272 kcal (2) G-P(sol) polarization free energy of solvation -59.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds