Wall clock time and date at job start Mon Mar 30 2020 02:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47145 * 2 1 4 4 C 1.36941 * 119.99884 * 92.42115 * 3 2 1 5 5 H 1.08003 * 119.99771 * 33.88335 * 4 3 2 6 6 C 1.38813 * 120.00025 * 213.60755 * 4 3 2 7 7 N 1.31611 * 120.00139 * 23.43219 * 6 4 3 8 8 Si 1.86803 * 119.99800 * 203.42814 * 6 4 3 9 9 H 1.48503 * 109.46938 * 60.00094 * 8 6 4 10 10 H 1.48493 * 109.47005 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46995 * 300.00127 * 8 6 4 12 12 C 1.46504 * 120.00433 * 272.42123 * 3 2 1 13 13 C 1.50697 * 109.47120 * 270.00090 * 12 3 2 14 14 N 1.31801 * 119.12107 * 269.72790 * 13 12 3 15 15 C 1.32335 * 120.81326 * 179.75763 * 14 13 12 16 16 C 1.38598 * 119.10405 * 0.51138 * 15 14 13 17 17 C 1.38594 * 118.40241 * 359.74460 * 16 15 14 18 18 N 1.31797 * 119.12351 * 89.99479 * 13 12 3 19 19 H 1.09001 * 109.47327 * 59.99465 * 1 2 3 20 20 H 1.08998 * 109.46982 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46845 * 299.99712 * 1 2 3 22 22 H 1.08999 * 109.46845 * 240.00288 * 2 1 3 23 23 H 1.09001 * 109.47327 * 120.00535 * 2 1 3 24 24 H 0.96995 * 120.00485 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.46860 * 30.00150 * 12 3 2 26 26 H 1.09000 * 109.46801 * 150.00001 * 12 3 2 27 27 H 1.08000 * 120.44529 * 180.22856 * 15 14 13 28 28 H 1.08009 * 120.79857 * 179.77316 * 16 15 14 29 29 H 1.08004 * 120.44577 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2938 2.0100 1.1849 5 1 2.6849 1.4448 2.0180 6 6 2.0757 3.3748 1.3134 7 7 1.2116 3.9801 0.5267 8 14 3.0087 4.3523 2.6032 9 1 4.4674 4.2446 2.3464 10 1 2.5978 5.7777 2.5370 11 1 2.7022 3.8114 3.9518 12 6 2.2120 2.0897 -1.2676 13 6 3.6167 1.8595 -1.7622 14 7 4.5689 2.6965 -1.4019 15 6 5.8149 2.5235 -1.8128 16 6 6.1089 1.4515 -2.6406 17 6 5.0801 0.5960 -3.0021 18 7 3.8594 0.8295 -2.5479 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.0594 4.9339 0.6162 25 1 1.5013 1.7162 -2.0048 26 1 2.0506 3.1569 -1.1155 27 1 6.5912 3.2109 -1.5109 28 1 7.1158 1.2864 -2.9951 29 1 5.2723 -0.2500 -3.6454 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054459901.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:06 Heat of formation + Delta-G solvation = 68.924141 kcal Electronic energy + Delta-G solvation = -13524.458801 eV Core-core repulsion = 11255.643175 eV Total energy + Delta-G solvation = -2268.815626 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.22066 -35.91396 -32.98250 -31.83615 -31.77384 -28.88319 -26.41077 -23.90728 -23.65172 -22.08720 -20.07870 -17.07902 -16.73100 -16.01805 -14.81244 -14.63098 -14.40976 -13.72409 -13.40397 -13.00385 -12.82843 -12.24295 -11.68737 -11.14526 -11.07269 -10.65527 -10.41557 -10.27857 -10.17482 -10.05991 -9.93161 -9.74894 -8.87650 -8.51701 -8.43966 -6.68983 -5.80648 -3.30935 1.54493 1.74969 3.42706 3.48049 3.53472 4.39142 4.58230 4.79111 4.88250 5.09751 5.42371 5.45697 5.63521 5.65149 6.17106 6.20038 6.21004 6.48143 6.55623 6.71976 6.80390 7.01424 7.08467 7.29793 7.60437 7.72513 7.82561 8.47424 8.95801 9.14407 9.80283 10.34422 11.21650 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.025945 B = 0.014255 C = 0.010213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.946689 B = 1963.717363 C = 2741.001986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 N -0.567 5.567 4 C -0.260 4.260 5 H 0.060 0.940 6 C 0.023 3.977 7 N -0.880 5.880 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.284 1.284 12 C 0.197 3.803 13 C 0.322 3.678 14 N -0.496 5.496 15 C 0.139 3.861 16 C -0.262 4.262 17 C 0.136 3.864 18 N -0.525 5.525 19 H 0.044 0.956 20 H 0.032 0.968 21 H 0.055 0.945 22 H 0.040 0.960 23 H 0.041 0.959 24 H 0.257 0.743 25 H 0.052 0.948 26 H 0.125 0.875 27 H 0.154 0.846 28 H 0.133 0.867 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.192 -4.306 -5.530 9.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 N -0.286 5.286 4 C -0.389 4.389 5 H 0.078 0.922 6 C -0.178 4.178 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.210 1.210 12 C 0.068 3.932 13 C 0.054 3.946 14 N -0.210 5.210 15 C -0.028 4.028 16 C -0.285 4.285 17 C -0.032 4.032 18 N -0.240 5.240 19 H 0.064 0.936 20 H 0.051 0.949 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.142 0.858 27 H 0.172 0.828 28 H 0.151 0.849 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.126 -3.981 -5.163 8.293 hybrid contribution 1.709 0.322 0.299 1.765 sum 6.835 -3.659 -4.863 9.152 Atomic orbital electron populations 1.22231 0.99228 0.98534 1.01971 1.20924 0.92228 0.86736 0.98605 1.43737 1.72962 1.10486 1.01455 1.18978 1.37313 0.91695 0.90962 0.92215 1.24984 0.96518 0.98190 0.98080 1.69908 1.31446 1.10203 1.40629 0.86424 0.80691 0.78963 0.81022 1.20695 1.21551 1.20999 1.20043 0.83277 1.03321 0.86558 1.25510 0.99601 0.84069 0.85416 1.68523 1.00535 1.30134 1.21814 1.23229 0.94452 0.94364 0.90781 1.22650 1.01446 0.99836 1.04608 1.23085 0.88637 0.96777 0.94653 1.68455 1.22375 1.20742 1.12464 0.93638 0.94908 0.92614 0.94157 0.94031 0.93271 0.93003 0.85790 0.82837 0.84940 0.82894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 10.24 37.16 0.38 -2.88 15 2 C 0.14 3.13 6.39 -4.05 -0.03 3.10 15 3 N -0.57 -14.53 2.44 -174.61 -0.43 -14.96 15 4 C -0.26 -7.23 9.47 -15.06 -0.14 -7.38 15 5 H 0.06 1.68 7.93 -52.48 -0.42 1.26 15 6 C 0.02 0.65 4.94 -17.43 -0.09 0.56 15 7 N -0.88 -25.15 11.32 55.49 0.63 -24.53 15 8 Si 0.90 22.16 29.61 -169.99 -5.03 17.13 15 9 H -0.28 -7.00 7.11 56.52 0.40 -6.60 15 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 12 C 0.20 4.88 5.74 -5.19 -0.03 4.85 15 13 C 0.32 7.37 7.23 -157.19 -1.14 6.23 15 14 N -0.50 -11.17 10.34 -10.72 -0.11 -11.28 15 15 C 0.14 2.45 11.30 -17.20 -0.19 2.25 15 16 C -0.26 -3.90 10.17 -39.32 -0.40 -4.30 15 17 C 0.14 2.20 11.30 -17.21 -0.19 2.00 15 18 N -0.53 -10.71 10.33 -10.73 -0.11 -10.82 15 19 H 0.04 0.94 8.14 -51.93 -0.42 0.51 15 20 H 0.03 0.56 8.14 -51.93 -0.42 0.13 15 21 H 0.05 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.04 0.85 8.09 -51.93 -0.42 0.43 15 23 H 0.04 0.91 8.02 -51.93 -0.42 0.49 15 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 25 H 0.05 1.23 8.07 -51.93 -0.42 0.81 15 26 H 0.13 3.42 5.31 -51.93 -0.28 3.15 15 27 H 0.15 2.17 8.06 -52.49 -0.42 1.74 15 28 H 0.13 1.43 8.06 -52.48 -0.42 1.01 15 29 H 0.15 1.85 8.06 -52.48 -0.42 1.43 15 LS Contribution 256.47 15.07 3.87 3.87 Total: -1.00 -30.72 256.47 -6.64 -37.35 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -3.62 Total: -1.22 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -1.83 Total: 4.44 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.02 Total: -61.58 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.72 -6.64 -37.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054459901.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.278 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds