Wall clock time and date at job start Mon Mar 30 2020 02:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47145 * 2 1 4 4 C 1.36941 * 119.99884 * 92.42115 * 3 2 1 5 5 H 1.08003 * 119.99771 * 33.88335 * 4 3 2 6 6 C 1.38813 * 120.00025 * 213.60755 * 4 3 2 7 7 N 1.31611 * 120.00139 * 23.43219 * 6 4 3 8 8 Si 1.86803 * 119.99800 * 203.42814 * 6 4 3 9 9 H 1.48503 * 109.46938 * 60.00094 * 8 6 4 10 10 H 1.48493 * 109.47005 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46995 * 300.00127 * 8 6 4 12 12 C 1.46504 * 120.00433 * 272.42123 * 3 2 1 13 13 C 1.50697 * 109.47120 * 270.00090 * 12 3 2 14 14 N 1.31801 * 119.12107 * 269.72790 * 13 12 3 15 15 C 1.32335 * 120.81326 * 179.75763 * 14 13 12 16 16 C 1.38598 * 119.10405 * 0.51138 * 15 14 13 17 17 C 1.38594 * 118.40241 * 359.74460 * 16 15 14 18 18 N 1.31797 * 119.12351 * 89.99479 * 13 12 3 19 19 H 1.09001 * 109.47327 * 59.99465 * 1 2 3 20 20 H 1.08998 * 109.46982 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46845 * 299.99712 * 1 2 3 22 22 H 1.08999 * 109.46845 * 240.00288 * 2 1 3 23 23 H 1.09001 * 109.47327 * 120.00535 * 2 1 3 24 24 H 0.96995 * 120.00485 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.46860 * 30.00150 * 12 3 2 26 26 H 1.09000 * 109.46801 * 150.00001 * 12 3 2 27 27 H 1.08000 * 120.44529 * 180.22856 * 15 14 13 28 28 H 1.08009 * 120.79857 * 179.77316 * 16 15 14 29 29 H 1.08004 * 120.44577 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2938 2.0100 1.1849 5 1 2.6849 1.4448 2.0180 6 6 2.0757 3.3748 1.3134 7 7 1.2116 3.9801 0.5267 8 14 3.0087 4.3523 2.6032 9 1 4.4674 4.2446 2.3464 10 1 2.5978 5.7777 2.5370 11 1 2.7022 3.8114 3.9518 12 6 2.2120 2.0897 -1.2676 13 6 3.6167 1.8595 -1.7622 14 7 4.5689 2.6965 -1.4019 15 6 5.8149 2.5235 -1.8128 16 6 6.1089 1.4515 -2.6406 17 6 5.0801 0.5960 -3.0021 18 7 3.8594 0.8295 -2.5479 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.0594 4.9339 0.6162 25 1 1.5013 1.7162 -2.0048 26 1 2.0506 3.1569 -1.1155 27 1 6.5912 3.2109 -1.5109 28 1 7.1158 1.2864 -2.9951 29 1 5.2723 -0.2500 -3.6454 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054459901.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:06 Heat of formation + Delta-G solvation = 49.203019 kcal Electronic energy + Delta-G solvation = -13525.313973 eV Core-core repulsion = 11255.643175 eV Total energy + Delta-G solvation = -2269.670798 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.68399 -37.77956 -34.45927 -33.78521 -33.31191 -30.65517 -28.25315 -25.62028 -25.20464 -23.66945 -21.90849 -18.95078 -18.24604 -17.47704 -16.69857 -16.20569 -15.99313 -15.62152 -15.04396 -14.55297 -14.27350 -14.06408 -13.38193 -13.12963 -12.89821 -12.51114 -12.33139 -12.13888 -11.95491 -11.68083 -11.56265 -11.50646 -10.54183 -10.26505 -9.95819 -8.69398 -7.86509 -5.41651 0.14384 0.39730 1.44549 1.50071 1.55555 2.51209 2.94941 3.21745 3.44300 3.52591 3.82196 3.88799 4.34604 4.39741 4.43635 4.68300 4.72463 4.85311 4.89369 5.04138 5.09134 5.27804 5.50359 5.58664 5.68152 5.74335 6.32852 6.43788 7.11096 7.45996 7.80842 8.32512 9.12995 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.025945 B = 0.014255 C = 0.010213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.946689 B = 1963.717363 C = 2741.001986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.139 3.861 3 N -0.583 5.583 4 C -0.271 4.271 5 H 0.051 0.949 6 C -0.018 4.018 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.285 1.285 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.204 3.796 13 C 0.301 3.699 14 N -0.542 5.542 15 C 0.120 3.880 16 C -0.230 4.230 17 C 0.128 3.872 18 N -0.543 5.543 19 H 0.036 0.964 20 H 0.069 0.931 21 H 0.031 0.969 22 H 0.050 0.950 23 H 0.041 0.959 24 H 0.254 0.746 25 H 0.049 0.951 26 H 0.092 0.908 27 H 0.185 0.815 28 H 0.186 0.814 29 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.333 -5.498 -6.418 11.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.400 4.400 5 H 0.068 0.932 6 C -0.216 4.216 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.211 1.211 10 H -0.214 1.214 11 H -0.201 1.201 12 C 0.076 3.924 13 C 0.032 3.968 14 N -0.257 5.257 15 C -0.045 4.045 16 C -0.252 4.252 17 C -0.038 4.038 18 N -0.258 5.258 19 H 0.055 0.945 20 H 0.088 0.912 21 H 0.050 0.950 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.110 0.890 27 H 0.202 0.798 28 H 0.204 0.796 29 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 7.298 -5.192 -6.067 10.818 hybrid contribution 1.196 0.602 0.425 1.404 sum 8.493 -4.591 -5.643 11.182 Atomic orbital electron populations 1.22082 0.97941 1.00402 1.00279 1.21012 0.93217 0.85385 0.98971 1.43873 1.74053 1.11328 1.01115 1.19077 1.37097 0.92139 0.91720 0.93182 1.25563 0.97217 0.98869 0.99942 1.70024 1.32790 1.09968 1.42236 0.85589 0.79086 0.77770 0.79467 1.21149 1.21427 1.20121 1.19650 0.85245 1.01245 0.86296 1.24730 0.98683 0.85734 0.87663 1.68379 1.02553 1.31235 1.23505 1.23869 0.93382 0.96122 0.91167 1.23175 1.03462 0.97125 1.01392 1.23930 0.87417 0.98102 0.94315 1.68362 1.24969 1.19998 1.12509 0.94510 0.91178 0.94991 0.93194 0.94029 0.93688 0.93317 0.89041 0.79809 0.79624 0.78315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.98 10.24 71.98 0.74 -5.25 15 2 C 0.14 6.19 6.39 86.38 0.55 6.74 15 3 N -0.58 -30.53 2.44 -706.35 -1.72 -32.26 15 4 C -0.27 -15.40 9.47 84.03 0.80 -14.60 15 5 H 0.05 2.88 7.93 -2.91 -0.02 2.86 15 6 C -0.02 -1.00 4.94 84.86 0.42 -0.58 15 7 N -0.91 -53.60 11.32 21.65 0.25 -53.36 15 8 Si 0.95 46.34 29.61 68.60 2.03 48.37 15 9 H -0.28 -13.92 7.11 99.48 0.71 -13.21 15 10 H -0.29 -13.82 7.11 99.48 0.71 -13.12 15 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 15 12 C 0.20 10.45 5.74 85.63 0.49 10.94 15 13 C 0.30 13.79 7.23 138.75 1.00 14.79 15 14 N -0.54 -24.20 10.34 -187.84 -1.94 -26.14 15 15 C 0.12 3.90 11.30 84.70 0.96 4.86 15 16 C -0.23 -5.74 10.17 22.44 0.23 -5.51 15 17 C 0.13 3.64 11.30 84.70 0.96 4.60 15 18 N -0.54 -21.29 10.33 -187.84 -1.94 -23.24 15 19 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 20 H 0.07 2.28 8.14 -2.39 -0.02 2.26 15 21 H 0.03 1.41 8.14 -2.39 -0.02 1.39 15 22 H 0.05 2.09 8.09 -2.39 -0.02 2.07 15 23 H 0.04 1.81 8.02 -2.39 -0.02 1.79 15 24 H 0.25 14.51 8.31 -92.71 -0.77 13.74 15 25 H 0.05 2.40 8.07 -2.39 -0.02 2.38 15 26 H 0.09 5.30 5.31 -2.39 -0.01 5.29 15 27 H 0.18 4.59 8.06 -2.91 -0.02 4.57 15 28 H 0.19 2.68 8.06 -2.91 -0.02 2.66 15 29 H 0.20 3.70 8.06 -2.91 -0.02 3.67 15 Total: -1.00 -68.91 256.47 3.94 -64.96 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.13 Total: 5.67 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 6.14 Total: 15.99 kcal Atomic # 7 Polarization: -129.63 SS G_CDS: -5.36 Total: -134.99 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -68.91 3.94 -64.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054459901.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.168 kcal (2) G-P(sol) polarization free energy of solvation -68.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds