Wall clock time and date at job start Mon Mar 30 2020 02:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.44763 * 2 1 4 4 C 1.53120 * 109.45365 * 240.03784 * 2 1 3 5 5 C 1.53400 * 109.39337 * 169.79594 * 4 2 1 6 6 C 1.50646 * 108.44104 * 49.39620 * 5 4 2 7 7 C 1.35375 * 124.57335 * 344.18953 * 6 5 4 8 8 N 1.33074 * 108.78985 * 179.49783 * 7 6 5 9 9 N 1.28957 * 109.97027 * 359.84415 * 8 7 6 10 10 N 1.35882 * 128.30307 * 163.25841 * 6 5 4 11 11 C 1.37562 * 126.98538 * 0.80075 * 10 6 5 12 12 H 1.08000 * 120.00558 * 359.70999 * 11 10 6 13 13 C 1.39015 * 120.00097 * 179.70682 * 11 10 6 14 14 N 1.31261 * 119.99761 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00373 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47176 * 270.00390 * 15 13 11 17 17 H 1.48501 * 109.46931 * 30.00263 * 15 13 11 18 18 H 1.48503 * 109.47412 * 149.99957 * 15 13 11 19 19 C 1.51040 * 123.71837 * 359.19880 * 7 6 5 20 20 H 1.09005 * 109.46647 * 300.04392 * 1 2 3 21 21 H 1.08995 * 109.46873 * 60.04129 * 1 2 3 22 22 H 1.08998 * 109.47317 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.48600 * 289.77098 * 4 2 1 24 24 H 1.09004 * 109.47973 * 49.81060 * 4 2 1 25 25 H 1.09000 * 109.67871 * 169.31696 * 5 4 2 26 26 H 1.08999 * 109.68528 * 289.83020 * 5 4 2 27 27 H 0.97001 * 119.99684 * 179.97438 * 14 13 11 28 28 H 1.09003 * 109.64120 * 103.22279 * 19 7 6 29 29 H 1.08997 * 109.64523 * 223.85465 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2508 5 6 3.5524 -0.5020 -1.3841 6 6 4.1979 -0.8160 -0.0596 7 6 3.5312 -0.9227 1.1138 8 7 4.4017 -1.2178 2.0761 9 7 5.5896 -1.3091 1.5825 10 7 5.5089 -1.0596 0.2017 11 6 6.5471 -1.0566 -0.7009 12 1 6.3559 -0.8487 -1.7433 13 6 7.8424 -1.3212 -0.2712 14 7 8.0748 -1.5744 0.9957 15 14 9.2523 -1.3166 -1.4965 16 1 9.4252 -2.6807 -2.0573 17 1 8.9500 -0.3643 -2.5952 18 1 10.5024 -0.9009 -0.8112 19 6 2.0407 -0.7219 1.2525 20 1 -0.3633 0.5146 0.8897 21 1 -0.3633 0.5132 -0.8903 22 1 -0.3634 -1.0276 0.0005 23 1 1.8333 -1.7878 -1.1652 24 1 1.5357 -0.3224 -2.1312 25 1 3.9521 -1.1604 -2.1553 26 1 3.7510 0.5365 -1.6490 27 1 8.9786 -1.7594 1.2954 28 1 1.5476 -1.6897 1.3443 29 1 1.8330 -0.1163 2.1346 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062430437.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:02 Heat of formation + Delta-G solvation = 63.829082 kcal Electronic energy + Delta-G solvation = -13522.235858 eV Core-core repulsion = 11253.199294 eV Total energy + Delta-G solvation = -2269.036564 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.34063 -36.64335 -34.10700 -31.97365 -30.33130 -28.97955 -26.03837 -24.99001 -22.71375 -21.01968 -20.27255 -18.21428 -17.41678 -15.51560 -14.75254 -14.48131 -13.94196 -13.73510 -12.97658 -12.84539 -12.53196 -11.98890 -11.90025 -11.73558 -11.38272 -11.31825 -11.01875 -10.64361 -10.35079 -10.24148 -10.15334 -9.78346 -9.39756 -9.01787 -8.58455 -7.09049 -6.78480 -4.57787 2.84173 2.96594 3.02645 3.35660 3.70885 4.18646 4.60239 4.84220 5.20548 5.25916 5.34282 5.75436 5.85506 5.95105 6.02903 6.14314 6.20269 6.23569 6.36194 6.44305 6.49692 6.51911 6.63265 6.86631 6.89937 7.05382 7.34296 7.90948 7.96426 8.57142 9.20220 10.18812 10.29477 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.056981 B = 0.009431 C = 0.008222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.269936 B = 2968.112392 C = 3404.624036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.103 4.103 5 C -0.024 4.024 6 C -0.091 4.091 7 C -0.070 4.070 8 N -0.330 5.330 9 N -0.101 5.101 10 N -0.141 5.141 11 C -0.313 4.313 12 H 0.119 0.881 13 C 0.047 3.953 14 N -0.760 5.760 15 Si 0.941 3.059 16 H -0.268 1.268 17 H -0.261 1.261 18 H -0.273 1.273 19 C -0.011 4.011 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.282 0.718 28 H 0.059 0.941 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.319 2.262 -6.575 10.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.087 0.913 4 C -0.141 4.141 5 C -0.063 4.063 6 C -0.227 4.227 7 C -0.219 4.219 8 N -0.188 5.188 9 N -0.077 5.077 10 N 0.088 4.912 11 C -0.450 4.450 12 H 0.137 0.863 13 C -0.173 4.173 14 N -0.387 5.387 15 Si 0.764 3.236 16 H -0.193 1.193 17 H -0.185 1.185 18 H -0.198 1.198 19 C -0.051 4.051 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.184 1.836 -5.077 8.209 hybrid contribution 0.288 0.202 -1.427 1.470 sum -5.896 2.038 -6.504 9.012 Atomic orbital electron populations 1.21822 0.95655 1.01497 1.01130 1.21149 0.94453 0.99903 0.95265 0.91268 1.21558 0.94840 1.00649 0.97021 1.19755 0.93748 1.00447 0.92397 1.20835 0.85703 1.18560 0.97557 1.20683 0.95934 1.15510 0.89792 1.73822 0.98452 1.18050 1.28430 1.82683 1.11008 1.28968 0.84993 1.46347 1.04047 1.32370 1.08417 1.20093 0.84999 1.49352 0.90520 0.86343 1.25781 0.99470 0.94904 0.97095 1.70159 1.22811 1.31395 1.14297 0.85720 0.78943 0.79472 0.79488 1.19264 1.18483 1.19782 1.19733 0.89486 0.99202 0.96640 0.92900 0.93061 0.92837 0.91975 0.92137 0.91872 0.92064 0.90766 0.92252 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.16 37.16 0.34 -1.38 15 2 C -0.09 -1.37 2.68 -90.39 -0.24 -1.61 15 3 H 0.07 1.10 8.11 -51.93 -0.42 0.68 15 4 C -0.10 -1.58 5.22 -26.46 -0.14 -1.72 15 5 C -0.02 -0.45 5.97 -27.70 -0.17 -0.62 15 6 C -0.09 -2.24 6.75 -81.85 -0.55 -2.79 15 7 C -0.07 -1.75 7.02 -82.91 -0.58 -2.33 15 8 N -0.33 -9.48 12.32 33.26 0.41 -9.07 15 9 N -0.10 -3.11 11.75 60.35 0.71 -2.40 15 10 N -0.14 -4.00 3.77 -7.86 -0.03 -4.03 15 11 C -0.31 -8.30 10.14 -14.69 -0.15 -8.44 15 12 H 0.12 2.80 7.74 -52.49 -0.41 2.39 15 13 C 0.05 1.20 5.50 -17.51 -0.10 1.10 15 14 N -0.76 -21.08 11.89 55.50 0.66 -20.42 15 15 Si 0.94 18.48 29.55 -169.99 -5.02 13.45 15 16 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 17 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 18 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 19 C -0.01 -0.21 5.60 -27.55 -0.15 -0.37 15 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 15 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.06 0.97 8.11 -51.93 -0.42 0.55 15 24 H 0.06 0.76 8.11 -51.93 -0.42 0.34 15 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 27 H 0.28 7.05 8.31 -40.82 -0.34 6.71 15 28 H 0.06 1.06 8.12 -51.93 -0.42 0.64 15 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 LS Contribution 245.99 15.07 3.71 3.71 Total: -1.00 -32.10 245.99 -5.07 -37.17 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -3.76 Total: -0.24 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -1.74 Total: -18.16 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 1.75 Total: -35.93 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -32.10 -5.07 -37.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062430437.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.996 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds